bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-12_CDS_annotation_glimmer3.pl_2_4

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  hao:PCC7418_1425  restriction modification system DNA specifici...  32.7    4.8
  ssc:100519813  homeobox protein TGIF2LX-like                        31.6    7.3
  ani:AN8150.2  hypothetical protein                                  32.3    8.1


> hao:PCC7418_1425  restriction modification system DNA specificity 
domain-containing protein
Length=400

 Score = 32.7 bits (73),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 18/48 (38%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query  14   HNDIVDGIPESYVHYFKQYLYEIEDRR-ISQNTDVSVRPLDALSETGI  60
            H+ I+DGIPE +       + EI  +  I +  +V   P+ ALSETG+
Sbjct  199  HSPIIDGIPEGWEKVSVPEIIEINPKETIEKEKEVWYIPMSALSETGM  246


> ssc:100519813  homeobox protein TGIF2LX-like
Length=149

 Score = 31.6 bits (70),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 17/24 (71%), Gaps = 0/24 (0%)

Query  25  YVHYFKQYLYEIEDRRISQNTDVS  48
           Y H+FK Y  EIE R +S+ TD+S
Sbjct  58  YEHWFKAYPSEIEKRMLSEQTDLS  81


> ani:AN8150.2  hypothetical protein
Length=1773

 Score = 32.3 bits (72),  Expect = 8.1, Method: Composition-based stats.
 Identities = 18/57 (32%), Positives = 30/57 (53%), Gaps = 2/57 (4%)

Query  2     AYDIDIETFPTIHNDIVDGIPESYVHYFKQYLYEIEDRRISQNTDV--SVRPLDALS  56
             +YD  + +   +HND+VD    + + +F++        R SQ+ D+     PLDALS
Sbjct  1286  SYDHGVSSALKLHNDLVDNTARASLQFFQRVDIGSITNRFSQDLDLVDMSLPLDALS  1342



Lambda      K        H        a         alpha
   0.322    0.142    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127067169544