bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-12_CDS_annotation_glimmer3.pl_2_7
Length=536
Score E
Sequences producing significant alignments: (Bits) Value
clp:CPK_ORF00729 hypothetical protein 40.0 0.20
pvu:PHAVU_010G032400g hypothetical protein 39.3 2.9
cpt:CpB0227 hypothetical protein 36.6 3.2
cpj:CPj0222 hypothetical protein 36.6 3.2
cpa:CP0543 hypothetical protein 36.6 3.2
cpn:CPn0222 hypothetical protein 36.6 3.2
vpb:VPBB_0326 Thiamin ABC transporter, substrate-binding compo... 37.0 9.1
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (56%), Gaps = 11/72 (15%)
Query 136 TVYPDGRSVVKYPNMVDLLPYLNYRDVQLFHKRINQQIKKYTNEKIHTYTVGEYGPKTFR 195
T+ D + + +Y ++V L +QLF KR+ +I + KI + GEYG K R
Sbjct 56 TLTYDDKHLPQYGSLVKL-------HLQLFLKRLRDRI---SPHKIRYFGCGEYGTKLQR 105
Query 196 PHFHILFF-FDS 206
PH+H+L F +DS
Sbjct 106 PHYHLLIFNYDS 117
> pvu:PHAVU_010G032400g hypothetical protein
Length=1701
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/87 (29%), Positives = 40/87 (46%), Gaps = 16/87 (18%)
Query 199 HILFFFDSERLAQIFGQLVDKAWRFGDSDTQRVWSSASSYVAGYLNSYLCL--------- 249
H+ F D + + +I+G L + W+F D +++W S S A ++NS C+
Sbjct 1324 HLDFLSDYDNIVKIYGYLSEHKWKFEDKAARKIWISES---AEWVNSEQCVIHDQDKLFG 1380
Query 250 PEFY----RYNRKIAPFGRFSQHFAER 272
EFY Y+ I PF F+ R
Sbjct 1381 SEFYVLEDLYDENILPFFSFALQVQNR 1407
> cpt:CpB0227 hypothetical protein
Length=113
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/67 (33%), Positives = 35/67 (52%), Gaps = 10/67 (15%)
Query 136 TVYPDGRSVVKYPNMVDLLPYLNYRDVQLFHKRINQQIKKYTNEKIHTYTVGEYGPKTFR 195
T+ D + + +Y ++V L +QLF KR+ + I + KI + G YG K R
Sbjct 56 TLTYDDKHLPQYGSLVKL-------HLQLFLKRLRKMI---SPHKIRYFECGAYGTKLQR 105
Query 196 PHFHILF 202
PH+H+L
Sbjct 106 PHYHLLL 112
> cpj:CPj0222 hypothetical protein
Length=113
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/67 (33%), Positives = 35/67 (52%), Gaps = 10/67 (15%)
Query 136 TVYPDGRSVVKYPNMVDLLPYLNYRDVQLFHKRINQQIKKYTNEKIHTYTVGEYGPKTFR 195
T+ D + + +Y ++V L +QLF KR+ + I + KI + G YG K R
Sbjct 56 TLTYDDKHLPQYGSLVKL-------HLQLFLKRLRKMI---SPHKIRYFECGAYGTKLQR 105
Query 196 PHFHILF 202
PH+H+L
Sbjct 106 PHYHLLL 112
> cpa:CP0543 hypothetical protein
Length=113
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/67 (33%), Positives = 35/67 (52%), Gaps = 10/67 (15%)
Query 136 TVYPDGRSVVKYPNMVDLLPYLNYRDVQLFHKRINQQIKKYTNEKIHTYTVGEYGPKTFR 195
T+ D + + +Y ++V L +QLF KR+ + I + KI + G YG K R
Sbjct 56 TLTYDDKHLPQYGSLVKL-------HLQLFLKRLRKMI---SPHKIRYFECGAYGTKLQR 105
Query 196 PHFHILF 202
PH+H+L
Sbjct 106 PHYHLLL 112
> cpn:CPn0222 hypothetical protein
Length=113
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/67 (33%), Positives = 35/67 (52%), Gaps = 10/67 (15%)
Query 136 TVYPDGRSVVKYPNMVDLLPYLNYRDVQLFHKRINQQIKKYTNEKIHTYTVGEYGPKTFR 195
T+ D + + +Y ++V L +QLF KR+ + I + KI + G YG K R
Sbjct 56 TLTYDDKHLPQYGSLVKL-------HLQLFLKRLRKMI---SPHKIRYFECGAYGTKLQR 105
Query 196 PHFHILF 202
PH+H+L
Sbjct 106 PHYHLLL 112
> vpb:VPBB_0326 Thiamin ABC transporter, substrate-binding component
Length=330
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 56/217 (26%), Positives = 91/217 (42%), Gaps = 32/217 (15%)
Query 119 LSDKAVTDLLAKTHLD--RTVYPDGRSVVKYPNMVDLLPYLNYRDVQLFHKRINQQIKKY 176
+++ T LL + ++D TV PDG S + +PY +++K K
Sbjct 90 MAEAKKTGLLTEHNVDTANTVLPDGWSDTTF------VPYDYGYFAFVYNKEKLANPPKS 143
Query 177 TNEKIHT---YTVGEYGPKTFRPHFHILFFFDSERLAQIFGQLVDKAWRFGDSDTQRV-- 231
E + T V P+T P ++ + S I+G V +AW+ S T V
Sbjct 144 MKELVETRDDLKVIYQDPRTSTPGQGLMLWMKS-----IYGDDVTQAWQKLASKTVTVTK 198
Query 232 -WSSA-SSYVAGYLN---SYLCLPEFYRYNRKIAPFG--RFSQ-HFAERSFIEAFKPEEN 283
WS A S ++ G + SY P ++ + F FS+ H+ + K +N
Sbjct 199 GWSEAYSMFLNGESDLVLSYTTSPAYHLIAENDSKFATANFSEGHYMQVEVAAKVKGSKN 258
Query 284 TEIFDKFVDGIYLSLGDKPTLCRPKRSLINRLYPILD 320
+E+ DKF+D I L D+ P N +YP+ D
Sbjct 259 SELADKFMDFI---LSDEFQSAMPTG---NWMYPVTD 289
Lambda K H a alpha
0.326 0.140 0.441 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1195327991658