bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-13_CDS_annotation_glimmer3.pl_2_1

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  psn:Pedsa_2391  ECF subfamily RNA polymerase sigma-24 subunit       38.5    1.3
  myd:102752006  PTCH2; patched 2                                     39.3
  myb:102256455  PTCH2; patched 2                                     39.3
  myb:102250340  ZFYVE9; zinc finger, FYVE domain containing 9        39.3
  bth:BT_2893  hypothetical protein                                   38.1    3.2
  mma:MM_2089  acetyl-CoA decarbonylase/synthase complex subunit ...  37.4    6.3


> psn:Pedsa_2391  ECF subfamily RNA polymerase sigma-24 subunit
Length=191

 Score = 38.5 bits (88),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 24/43 (56%), Gaps = 0/43 (0%)

Query  256  ERTANNLIYATNAAHYYEGTYNMYRGRKAKEDAASDFMGNQWQ  298
            ++ A +LI+   ++H Y   YN++R + A ED   D   + W+
Sbjct  21   DKNAFDLIFKKYSSHLYHAAYNLFRDKAACEDMVQDLFVDLWE  63


> myd:102752006  PTCH2; patched 2
Length=1171

 Score = 39.3 bits (90),  Expect = 1.5, Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (51%), Gaps = 7/81 (9%)

Query  92   TDFSSLG-EVGVRLAQELKLFSEKKGLDIRNFSLKDYLKAQIDKMRGETNWRNLSPEAIR  150
            TD   L  EVG R++QEL+   EK G      +    +  Q  +  GE     L+PEA+R
Sbjct  80   TDLEQLWVEVGSRVSQELQYTKEKLG---EEAAYTSQMLIQTPRQEGENV---LTPEALR  133

Query  151  FNIMSGLEAAKIQMEGLKEQW  171
             ++ + L A+K+Q+    + W
Sbjct  134  LHLQAALTASKVQVSLYGKSW  154


> myb:102256455  PTCH2; patched 2
Length=1207

 Score = 39.3 bits (90),  Expect = 1.5, Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (51%), Gaps = 7/81 (9%)

Query  92   TDFSSLG-EVGVRLAQELKLFSEKKGLDIRNFSLKDYLKAQIDKMRGETNWRNLSPEAIR  150
            TD   L  EVG R++QEL+   EK G      +    +  Q  +  GE     L+PEA+R
Sbjct  80   TDLEQLWVEVGSRVSQELQYTKEKLG---EEAAYTSQMLIQTPRQEGENV---LTPEALR  133

Query  151  FNIMSGLEAAKIQMEGLKEQW  171
             ++ + L A+K+Q+    + W
Sbjct  134  LHLQAALTASKVQVSLYGKSW  154


> myb:102250340  ZFYVE9; zinc finger, FYVE domain containing 9
Length=1422

 Score = 39.3 bits (90),  Expect = 1.5, Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query  3    ARSQRKANEMNFKINQMNNEFNAKEAEKARAFQLDMWNKENAYNTPSAQRERMEQAGYN-  61
            + SQ  A+    K+N++N+   +KE EK     L M   E+ YN    + +RM +AG N 
Sbjct  393  SESQEMADWKLTKLNEVNDSQVSKENEKF----LQMNQPEDTYNDSGGECDRMAEAGLNL  448

Query  62   --AYMNPADAGSASGMSSTTSASASS  85
               +MN ++    S ++ T +A+ SS
Sbjct  449  KGTFMNESEGCDFSTVTDTPAANTSS  474


> bth:BT_2893  hypothetical protein
Length=624

 Score = 38.1 bits (87),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 22/65 (34%), Positives = 33/65 (51%), Gaps = 2/65 (3%)

Query  236  SRELLNYTRANGQKISNKVAERTANNLIYATNAAHYYEGTYNMYRGRKAKEDAASDFMGN  295
            S  ++ Y  A+G  I N  +  +      AT   HY  G YNMY GR+ +  A+ +F G 
Sbjct  375  STPIIGYN-ADGTPIINGASGYSETGFA-ATAGKHYPAGVYNMYVGREPRFYASINFNGQ  432

Query  296  QWQNQ  300
            QW+ +
Sbjct  433  QWRGR  437


> mma:MM_2089  acetyl-CoA decarbonylase/synthase complex subunit 
alpha (EC:1.2.99.2)
Length=806

 Score = 37.4 bits (85),  Expect = 6.3, Method: Compositional matrix adjust.
 Identities = 27/94 (29%), Positives = 41/94 (44%), Gaps = 10/94 (11%)

Query  47   TPSAQRERMEQAGYNAYM-----NPADAGSASGMSSTTSASASSPAVMQATDFSSLGEVG  101
             P AQ+ ++     NA +     N  DAG    +    S +     ++   D+  LGE+ 
Sbjct  329  VPEAQKLKIPVIASNAKIMYGLPNRTDAGVEETIEELKSGAIPGAVIL---DYEKLGEIS  385

Query  102  VRLAQELKLFSEKKGLDIRNFSLKDYLKAQIDKM  135
            VRLAQE+    E  G  +R     + LK  +DK 
Sbjct  386  VRLAQEMHPIREAAG--VREIPSDEQLKEWVDKC  417



Lambda      K        H        a         alpha
   0.311    0.124    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738033807426