bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-14_CDS_annotation_glimmer3.pl_2_3

Length=55
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  dsi:Dsim_GD12413  GD12413 gene product from transcript GD12413-RA   32.7    4.4
  dya:Dyak_GE22158  GE22158 gene product from transcript GE22158-RA   32.0    7.5


> dsi:Dsim_GD12413  GD12413 gene product from transcript GD12413-RA
Length=955

 Score = 32.7 bits (73),  Expect = 4.4, Method: Composition-based stats.
 Identities = 17/44 (39%), Positives = 28/44 (64%), Gaps = 1/44 (2%)

Query  4    GESTRVDMVNEDGEIEKIYLVERTDRRV-IIKTVKDYKKEQIEN  46
            GE+  +D V  DG  E+++ +ER +  V I+KT K   +EQ+E+
Sbjct  563  GENAAIDYVIIDGNNEQLFTIERNNESVAILKTQKPIDREQVES  606


> dya:Dyak_GE22158  GE22158 gene product from transcript GE22158-RA
Length=1820

 Score = 32.0 bits (71),  Expect = 7.5, Method: Composition-based stats.
 Identities = 17/44 (39%), Positives = 28/44 (64%), Gaps = 1/44 (2%)

Query  4     GESTRVDMVNEDGEIEKIYLVERTDRRV-IIKTVKDYKKEQIEN  46
             GE+  +D V  DG  E+++ VER +  + I+KT K   +EQ+E+
Sbjct  1428  GENAAIDYVIIDGNNEQLFTVERNNESLAILKTQKPIDREQVES  1471



Lambda      K        H        a         alpha
   0.310    0.130    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127527459561