bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-14_CDS_annotation_glimmer3.pl_2_8

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  xma:102227496  protocadherin-16-like                                35.8    0.98
  crb:CARUB_v10013838mg  hypothetical protein                         34.3    2.6


> xma:102227496  protocadherin-16-like
Length=3269

 Score = 35.8 bits (81),  Expect = 0.98, Method: Compositional matrix adjust.
 Identities = 22/65 (34%), Positives = 35/65 (54%), Gaps = 4/65 (6%)

Query  4     VEIKEGETIETK---VRRITEEKTPITDSAPIVYTNRTDGVIAGYNIRTDR-FEIALSAM  59
             VE+KEG  I T+   VR ++ E   +   +P++Y  R DG  AG+ I  D  +    S++
Sbjct  1008  VELKEGTPINTRFLQVRAMSREVPGLGHLSPLMYHLRPDGDAAGFGIAADSGWLFVKSSL  1067

Query  60    DKVNK  64
             D+  K
Sbjct  1068  DREQK  1072


> crb:CARUB_v10013838mg  hypothetical protein
Length=409

 Score = 34.3 bits (77),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 33/64 (52%), Gaps = 1/64 (2%)

Query  5    EIKEGETIETKVRRITEEKTPITDSAPIVYTNR-TDGVIAGYNIRTDRFEIALSAMDKVN  63
            EIKE    E++   I E+ T +  S P+VY NR TDG +A    + +  E   S  D++ 
Sbjct  90   EIKESGIDESETVNIAEDVTQLIGSTPMVYLNRVTDGCLADIAAKLESMEPCRSVKDRIG  149

Query  64   KAKI  67
             + I
Sbjct  150  LSMI  153



Lambda      K        H        a         alpha
   0.304    0.122    0.312    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128762239933