bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-19_CDS_annotation_glimmer3.pl_2_4

Length=65
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  sor:SOR_0001  dnaA; chromosome replication initiator DnaA           32.3    6.0
  stv:V470_00045  chromosomal replication initiator protein DnaA      32.3    6.2
  mfu:LILAB_14700  hypothetical protein                               32.0    8.4


> sor:SOR_0001  dnaA; chromosome replication initiator DnaA
Length=453

 Score = 32.3 bits (72),  Expect = 6.0, Method: Compositional matrix adjust.
 Identities = 13/21 (62%), Positives = 15/21 (71%), Gaps = 0/21 (0%)

Query  15  TEGFEIIDDEIQKHYIFTKKE  35
             GFEI D EI+ HYIFTK +
Sbjct  63  AAGFEIYDSEIKPHYIFTKPQ  83


> stv:V470_00045  chromosomal replication initiator protein DnaA
Length=453

 Score = 32.3 bits (72),  Expect = 6.2, Method: Compositional matrix adjust.
 Identities = 13/21 (62%), Positives = 15/21 (71%), Gaps = 0/21 (0%)

Query  15  TEGFEIIDDEIQKHYIFTKKE  35
             GFEI D EI+ HYIFTK +
Sbjct  63  AAGFEIYDSEIKPHYIFTKPQ  83


> mfu:LILAB_14700  hypothetical protein
Length=1068

 Score = 32.0 bits (71),  Expect = 8.4, Method: Composition-based stats.
 Identities = 11/27 (41%), Positives = 17/27 (63%), Gaps = 0/27 (0%)

Query  31   FTKKERRLLCEKIYDKNEDYEKWMKSL  57
            FT+  R L  E+ +D+N D++ WM  L
Sbjct  806  FTRVSRGLFRERFFDRNADFDTWMTDL  832



Lambda      K        H        a         alpha
   0.317    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128662101624