bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-1_CDS_annotation_glimmer3.pl_2_3

Length=87
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  aai:AARI_14140  hypothetical protein                                33.9    3.5
  slr:L21SP2_0683  hypothetical protein                               33.1    3.5


> aai:AARI_14140  hypothetical protein
Length=1663

 Score = 33.9 bits (76),  Expect = 3.5, Method: Composition-based stats.
 Identities = 19/58 (33%), Positives = 29/58 (50%), Gaps = 0/58 (0%)

Query  4    STKMKRSKAMMNKTWNVRDQPRESLERQLEKKYKEIDGNYRMLRKVSNIEDAKMLVDE  61
            S ++   +A+ NK W+V D P ES++R        +D  YR  RKV    D +  + E
Sbjct  114  SRRVAGGQALSNKFWSVVDDPTESIDRSAWTNPTIVDALYRGSRKVFVFSDERRSILE  171


> slr:L21SP2_0683  hypothetical protein
Length=227

 Score = 33.1 bits (74),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 38/71 (54%), Gaps = 8/71 (11%)

Query  17   TWNVRDQPRESLERQLEKKYKE----IDGNY--RMLRKVSNIEDAKMLVDEIW--QMKSF  68
              NVR  PRE+ E+QL + Y E    I GNY  RM  ++S+ E  K L +  +  Q +SF
Sbjct  83   ACNVRMIPREAEEQQLAEMYMERLHLIPGNYKERMYNRLSHFECLKRLRNCEYREQRESF  142

Query  69   ANTIELELMRR  79
            A   EL +  R
Sbjct  143  AMLTELAISAR  153



Lambda      K        H        a         alpha
   0.313    0.125    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129307972740