bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-20_CDS_annotation_glimmer3.pl_2_9

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  paeh:H70357_33905  response regulator receiver protein              40.0    0.78
  mmg:MTBMA_c04780  hypothetical protein                              38.5    2.2
  dpp:DICPUDRAFT_153195  hypothetical protein                         37.0    5.9


> paeh:H70357_33905  response regulator receiver protein
Length=1145

 Score = 40.0 bits (92),  Expect = 0.78, Method: Compositional matrix adjust.
 Identities = 47/148 (32%), Positives = 74/148 (50%), Gaps = 19/148 (13%)

Query  103  IAERQRMKNEKAIADATVNKLNAEAEKLRGDTKDPNVTKDSQRLEFDWNLVKKQREQVQL  162
            + E Q  K E    +A   +L A+ ++L   T++     D  R + +   ++ Q E++Q+
Sbjct  286  LGETQLQKEE---LEAQTEELQAQTQELEAQTEELLAQTDELRSQTEQ--LQAQGEELQM  340

Query  163  AVDEI---NKEFQRAINEADVQIKHGLYSETLAKIDKLIADKDVSEEM---KQNLQKQRD  216
              D +   NK+ QR +   + Q      SE  A+ D+L   K  +EE+    Q+LQKQ +
Sbjct  341  QADSLLTSNKQLQRQMELTEEQ-----KSEIEAQADEL---KLQTEELFASNQDLQKQME  392

Query  217  LIESQISATQAQTDLIKAQTSATQAQTE  244
            + E Q    QAQ D + AQT   QAQTE
Sbjct  393  ISEQQKEEIQAQADELLAQTEELQAQTE  420


> mmg:MTBMA_c04780  hypothetical protein
Length=653

 Score = 38.5 bits (88),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 32/120 (27%), Positives = 62/120 (52%), Gaps = 10/120 (8%)

Query  169  KEFQRAINEADVQIKHGLYSETLAKIDKLIADKDVSEEMKQNLQKQRDLIES---QISAT  225
            +E+    NEA  +    ++ E L K+ +   +K+V E+ ++ L+ QR+ ++     I  +
Sbjct  260  REYFETFNEAADEFFSSIFREELRKVHEAEWEKEV-EKFRKRLRIQRETLQKFQDTIDTS  318

Query  226  QAQTDLIKAQTSATQAQTETENALRDGRIKLTEREANKILADI---GLSEARSLNEYESL  282
              + DL+ A  +A +    T   +RD R K + +E  KI+AD    G+ EA+ + E + +
Sbjct  319  TRKGDLLYAHYAAVEDVLRT---IRDAREKYSWKEIRKIIADARSKGMVEAQMIQEIDGM  375


> dpp:DICPUDRAFT_153195  hypothetical protein
Length=662

 Score = 37.0 bits (84),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 53/190 (28%), Positives = 84/190 (44%), Gaps = 40/190 (21%)

Query  129  KLRGDTKDPNVTK--DSQRLEFDWNLV------KKQREQVQLAVDEINKEFQRAINE---  177
            KL GD K  ++ K  + Q  E   +++      K++ E++ +  DE  K F+  I +   
Sbjct  314  KLNGDEKAEDIVKLLEKQYHEMAKSIINENTKLKEELEKINVNKDEYIKSFEDFIKDRYK  373

Query  178  ----ADVQIKHGLYSETLAKIDKLIADKDVSEE---MKQNLQKQRDLIESQISATQAQTD  230
                A V + HG   E L  +DK I + +V E    +K  L++Q+   E+ I+    Q +
Sbjct  374  VALDATVDLLHGDIGEKLKDMDKYIQE-NVGENQKLVKDTLERQK---ENLINIYNKQAE  429

Query  231  LIK-------AQTSATQAQTETENALRDGRI--KLTEREANKILADIGLSEARSLNEYES  281
             IK       A T  TQ   + E  LRD     KL +R  N +           L++Y+ 
Sbjct  430  AIKKSEVEKRAVTQLTQLIVDIEKLLRDASAQGKLVQRSFNNL---------TDLSQYDE  480

Query  282  LIKAMTGTQP  291
            LIK +  T P
Sbjct  481  LIKELLNTLP  490



Lambda      K        H        a         alpha
   0.310    0.125    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 606891589622