bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-22_CDS_annotation_glimmer3.pl_2_2

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  tsc:TSC_c25050  gidB; 16S rRNA methyltransferase GidB (EC:2.1.-.-)  34.3    1.7
  cfa:475219  DBF4; DBF4 homolog (S. cerevisiae)                      32.7    6.8
  lgi:LOTGIDRAFT_155059  hypothetical protein                         32.3    8.4


> tsc:TSC_c25050  gidB; 16S rRNA methyltransferase GidB (EC:2.1.-.-)
Length=246

 Score = 34.3 bits (77),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (58%), Gaps = 1/38 (3%)

Query  14   VLPTTQEEKEYMIVIGKHLATTEKFPTREAAEEENQLC  51
            VLP  QEE+  ++V+ K  +T  ++P R    E N LC
Sbjct  210  VLPVAQEERN-LVVVPKEASTPARYPRRPGVPERNPLC  246


> cfa:475219  DBF4; DBF4 homolog (S. cerevisiae)
Length=678

 Score = 32.7 bits (73),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 21/54 (39%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query  31   HLATTEKFPTREAAEEENQLCRLESNCGNDLCLQRSGRIRKKIKTLRKKSHKKN  84
            HL    K P+R   EE N     E N  N   LQ SG I +K+K L  ++ K+N
Sbjct  543  HLTIRAKTPSRSPPEEPN-----ECNFSNMDGLQTSGMIHRKVKILLGRNKKEN  591


> lgi:LOTGIDRAFT_155059  hypothetical protein
Length=337

 Score = 32.3 bits (72),  Expect = 8.4, Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 42/74 (57%), Gaps = 4/74 (5%)

Query  12  FKVLPTTQEEKEYMIVIGKHLATTEKFPTREAAEEENQLCR--LESNCGNDLCLQRSGRI  69
            +++P  + EK  ++ +  + A  ++ P +EA EE +Q  +  L+SN  +D+ + + G++
Sbjct  7   MRLVPADEPEK--IVTVKPYGAVYDQNPVKEALEELSQEMQRLLKSNISDDIKMDQYGQM  64

Query  70  RKKIKTLRKKSHKK  83
             + + L+ K H +
Sbjct  65  LHRYRILQNKRHAR  78



Lambda      K        H        a         alpha
   0.315    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125410680467