bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-24_CDS_annotation_glimmer3.pl_2_1

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ape:APE_1878  ctaB; protoheme IX farnesyltransferase (EC:2.5.1.-)   39.3    0.77
  clp:CPK_ORF00729  hypothetical protein                              34.7    9.6
  dfa:DFA_04627  HEAT repeat-containing protein                       36.6    9.6


> ape:APE_1878  ctaB; protoheme IX farnesyltransferase (EC:2.5.1.-)
Length=305

 Score = 39.3 bits (90),  Expect = 0.77, Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query  245  ISTAWTYACVFGSSLALGFLREVAQRVLRPSSFSRIVKGGFSRLVKLREFLSKVKFSQRF  304
            I+ AW +A  +G     GFL  V   VL   + SRI  GGF+R  + RE L   KF+   
Sbjct  231  IAVAWAFALYYGY----GFLTAVITTVLAALAISRI--GGFARTGERREALKLFKFASPI  284

Query  305  IAVV  308
            IAVV
Sbjct  285  IAVV  288


> clp:CPK_ORF00729  hypothetical protein
Length=121

 Score = 34.7 bits (78),  Expect = 9.6, Method: Compositional matrix adjust.
 Identities = 28/118 (24%), Positives = 54/118 (46%), Gaps = 16/118 (14%)

Query  1    MNRPWDYFTQRIMVPCGRCEECLRQQRNDWYVRLERETKYQKSLHRNSVFVTITI----A  56
            + +P +Y  + +++PC +C  C  Q    W  R   E     SL+  + F+T+T      
Sbjct  9    LTQPEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEA----SLYEKNCFLTLTYDDKHL  64

Query  57   PEYYDSALLNPSSFIRMWFERIRRCFGHSIKHAVFQEFGMHPEQGNEPRLHFHGVLWD  114
            P+Y     L+   F++   +RI     H I++    E+G   +     R H+H ++++
Sbjct  65   PQYGSLVKLHLQLFLKRLRDRIS---PHKIRYFGCGEYGTKLQ-----RPHYHLLIFN  114


> dfa:DFA_04627  HEAT repeat-containing protein
Length=2675

 Score = 36.6 bits (83),  Expect = 9.6, Method: Composition-based stats.
 Identities = 32/115 (28%), Positives = 54/115 (47%), Gaps = 11/115 (10%)

Query  185   KYRRKFVSPGVGDYLGDFKAPGVTSGLWS-YTDYRTGVVYRYRIPRYYDK---YLSQDAL  240
             ++  +F+ P   + L  FK   V     S Y+     + +R++I +YY +   YL  + L
Sbjct  903   RFVGEFIGPVYLNLLDLFKNDFVYEAAKSVYSSLALTIPHRFKIGQYYAQQSTYLIDNIL  962

Query  241   FFRKISTAWTYACVFGSSLALGFLREVAQRVLRPSS----FSRIVKGGFSRLVKL  291
             F   +S     + +      LG L+E++QR L P+S    F  IVK G  + + L
Sbjct  963   FHPVMSDMQVLSAI---QRTLGHLKELSQRELLPASAFNFFWPIVKNGLEKTISL  1014



Lambda      K        H        a         alpha
   0.327    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 606891589622