bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-31_CDS_annotation_glimmer3.pl_2_2

Length=76
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  apv:Apar_0688  30S ribosomal protein S16                            31.2    10.0


> apv:Apar_0688  30S ribosomal protein S16
Length=128

 Score = 31.2 bits (69),  Expect = 10.0, Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 0/50 (0%)

Query  1   MTEINLEVAVRNFREGARKNPQIGAFPSDYELHHVGYFDDETGQVLPVSS  50
           M E +L V +R  R GA+K P      +D  +   G + +E G+  P++S
Sbjct  1   MEEFSLAVKIRLARHGAKKRPYYRVVVADGRMPRDGRYIEEVGRYNPLTS  50



Lambda      K        H        a         alpha
   0.314    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129127441832