bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-31_CDS_annotation_glimmer3.pl_2_4

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  dhd:Dhaf_4807  phage tape measure protein                           39.7    0.58
  smd:Smed_3341  purine nucleoside phosphorylase                      38.1    1.1
  rcp:RCAP_rcc02194  phospholipase/carboxylesterase (EC:3.1.-.-)      37.4    1.8
  cla:Cla_0855  hypothetical protein                                  37.0    4.1


> dhd:Dhaf_4807  phage tape measure protein
Length=694

 Score = 39.7 bits (91),  Expect = 0.58, Method: Compositional matrix adjust.
 Identities = 30/91 (33%), Positives = 42/91 (46%), Gaps = 16/91 (18%)

Query  11   GGAIGGLFGDAIGGTITGATLGSHLGS------IGSALGTGMGLVGSAKGLYDSFNNTSL  64
            G   G +F +A+ G I+GA +GS +G       +G A G G+GL+          N T+ 
Sbjct  162  GSDAGTMFQNALSGVISGAAIGSAVGPPVIGTVVGIAAGLGLGLI----------NGTTS  211

Query  65   KNQMAYDQFKSELDYQYWSRKMSNRHTLEVG  95
             N    D FK  +  QY + K S   TL  G
Sbjct  212  INNKKDDAFKDYVQEQYNTIKQSQEDTLAHG  242


> smd:Smed_3341  purine nucleoside phosphorylase
Length=265

 Score = 38.1 bits (87),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (49%), Gaps = 12/103 (12%)

Query  80   QYWSRKMSNRHTLEVGDLRQAGLNPILSANSAGSVASAIPNGAIPETSSQQSAAGAAREA  139
             Y+ R  +N   + +  L++ G++ ++  NSAGS+   +P G++   +   + AGA    
Sbjct  78   HYYERGDANAMRVPIETLKRIGVDNLILTNSAGSLREDMPPGSVMRIADHIAFAGA----  133

Query  140  NRINAMIGESTSAK-----NLADAQASIMNAETGRMVGIASAR  177
               N +IG  + A+     N  DA  ++   ET   +GI  AR
Sbjct  134  ---NPLIGVESDARFVGMTNAYDAALAVGMEETAERLGIPLAR  173


> rcp:RCAP_rcc02194  phospholipase/carboxylesterase (EC:3.1.-.-)
Length=220

 Score = 37.4 bits (85),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (2%)

Query  126  TSSQQSAAGAAREANRINAMIGESTSAKNLADAQASIMNAETGRMVGIASA-RRANAEAG  184
            ++ +++AAG  R +  +NA + +  +A+ LA AQ +++    G M+ +  A RRA A AG
Sbjct  77   SAPEEAAAGLTRSSEDLNAFLDQVMAAEGLAAAQIALLGFSQGTMMALQVAPRRAQALAG  136

Query  185  LAG  187
            + G
Sbjct  137  VVG  139


> cla:Cla_0855  hypothetical protein
Length=1829

 Score = 37.0 bits (84),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 14/102 (14%)

Query  11    GGAIGGLFGDAIG---GTITGATLGSHLGSI-GSALGTGMGLVGSAKGLYDSFNNTSLKN  66
             GGAIGG+ G  I    GT+ G  LGS +G I G    TG GL      L+   N    K+
Sbjct  1090  GGAIGGVLGSLIAPGIGTLVGGLLGSVIGGIFGKTKATGSGL-----RLWQDIN---FKD  1141

Query  67    QMAYDQFKSELDYQY--WSRKMSNRHTLEVGDLRQAGLNPIL  106
               +    +S +DYQ   W  K S      + D +   LN  L
Sbjct  1142  HFSQGNLQSYIDYQKKGWFSKKSWTEYQNINDRKIKELNLFL  1183



Lambda      K        H        a         alpha
   0.313    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 386865484076