bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-35_CDS_annotation_glimmer3.pl_2_2

Length=53
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  pti:PHATRDRAFT_40219  hypothetical protein                          32.7    3.9
  pti:PHATRDRAFT_40623  hypothetical protein                          32.3    4.6
  crb:CARUB_v10000554mg  hypothetical protein                         32.3    4.9


> pti:PHATRDRAFT_40219  hypothetical protein
Length=942

 Score = 32.7 bits (73),  Expect = 3.9, Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (61%), Gaps = 0/28 (0%)

Query  15   GEKLRGNMNKAMDNIKNGHGIDNITGNR  42
             EKLRGN N+  DN  +G+GI   T  R
Sbjct  104  AEKLRGNKNETQDNFSDGNGISYNTAER  131


> pti:PHATRDRAFT_40623  hypothetical protein
Length=631

 Score = 32.3 bits (72),  Expect = 4.6, Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (61%), Gaps = 0/28 (0%)

Query  15  GEKLRGNMNKAMDNIKNGHGIDNITGNR  42
            EKLRGN N+  DN  +G+GI   T  R
Sbjct  37  AEKLRGNKNETQDNFSDGNGISYNTAER  64


> crb:CARUB_v10000554mg  hypothetical protein
Length=583

 Score = 32.3 bits (72),  Expect = 4.9, Method: Composition-based stats.
 Identities = 14/43 (33%), Positives = 28/43 (65%), Gaps = 0/43 (0%)

Query  10  AGRKAGEKLRGNMNKAMDNIKNGHGIDNITGNRNRAGGGAGRR  52
           A +K  ++L  N+++A+ ++KN   +D+   N+N + GG GR+
Sbjct  48  AMQKRFQRLGRNVSEAIASLKNSLSLDSARDNQNASAGGGGRK  90



Lambda      K        H        a         alpha
   0.314    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128296444671