bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-35_CDS_annotation_glimmer3.pl_2_3
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
clp:CPK_ORF00729 hypothetical protein 43.9 0.004
cpt:CpB0227 hypothetical protein 40.8 0.034
cpj:CPj0222 hypothetical protein 40.8 0.034
cpa:CP0543 hypothetical protein 40.8 0.034
cpn:CPn0222 hypothetical protein 40.8 0.034
pmt:PMT1540 ABC transporter ATP-binding protein 38.1 1.5
lhe:lhv_0265 putative replicative protein 37.4 2.2
obr:102709054 aldehyde dehydrogenase family 2 member B7, mitoc... 37.4 3.0
tmb:Thimo_1353 c-type cytochrome biogenesis protein CcmF 37.0 3.6
ene:ENT_01800 hypothetical protein 36.2 4.7
cep:Cri9333_4067 hypothetical protein 36.2 7.3
gmx:100781426 auxilin-related protein 2-like 35.8 8.9
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/48 (40%), Positives = 33/48 (69%), Gaps = 1/48 (2%)
Query 28 TLLYTDVQKFLKRLR-KAYKSRLRFFCAGEYGEQTARPHYHMILYGWE 74
+L+ +Q FLKRLR + ++R+F GEYG + RPHYH++++ ++
Sbjct 69 SLVKLHLQLFLKRLRDRISPHKIRYFGCGEYGTKLQRPHYHLLIFNYD 116
> cpt:CpB0227 hypothetical protein
Length=113
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (66%), Gaps = 1/44 (2%)
Query 28 TLLYTDVQKFLKRLRKAYKS-RLRFFCAGEYGEQTARPHYHMIL 70
+L+ +Q FLKRLRK ++R+F G YG + RPHYH++L
Sbjct 69 SLVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpj:CPj0222 hypothetical protein
Length=113
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (66%), Gaps = 1/44 (2%)
Query 28 TLLYTDVQKFLKRLRKAYKS-RLRFFCAGEYGEQTARPHYHMIL 70
+L+ +Q FLKRLRK ++R+F G YG + RPHYH++L
Sbjct 69 SLVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpa:CP0543 hypothetical protein
Length=113
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (66%), Gaps = 1/44 (2%)
Query 28 TLLYTDVQKFLKRLRKAYKS-RLRFFCAGEYGEQTARPHYHMIL 70
+L+ +Q FLKRLRK ++R+F G YG + RPHYH++L
Sbjct 69 SLVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpn:CPn0222 hypothetical protein
Length=113
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (66%), Gaps = 1/44 (2%)
Query 28 TLLYTDVQKFLKRLRKAYKS-RLRFFCAGEYGEQTARPHYHMIL 70
+L+ +Q FLKRLRK ++R+F G YG + RPHYH++L
Sbjct 69 SLVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> pmt:PMT1540 ABC transporter ATP-binding protein
Length=652
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 18/122 (15%)
Query 15 VWKPGKKTPESVQTLLYTDVQKFLKRLRKAYKSRLRFFCAGEYGEQTARPHYHMILYGWE 74
W ++ E +Q L TD+++ +K L Y+ R+ A ARP +L E
Sbjct 133 AWSLEQQCQEVLQRLGITDLERPVKELSGGYRKRVGLASA-----LVARPD---VLLLDE 184
Query 75 PTDLKQLYKIHHNGYYTSEWLEKLWGNGQIQIAQAVPETYRYVAGYVTKKMYEIDGKKAN 134
PT+ + + WL++ G A + RYV VT++M E+D KA+
Sbjct 185 PTNHLDAAAVE----WLQSWLDRFPG------ALVLVTHDRYVLDRVTRRMVEVDRGKAH 234
Query 135 AY 136
Y
Sbjct 235 NY 236
> lhe:lhv_0265 putative replicative protein
Length=285
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 28/141 (20%)
Query 20 KKTPESVQTLLYTDVQKFLKRLRKAYKSRLRFFCAGEYGEQTARPHYHMILYGWEPTDLK 79
K +PE V Y D ++F+++LR+ Y + + E + + R H H+++ + D
Sbjct 145 KNSPEVV----YKDFKRFIRKLREKYNPTIEYIAILE-PQASGRWHLHVLM---KTLDHS 196
Query 80 QLYKIHHNGYYTSEWLEKLWGNG--QIQIAQAVPETYRYVAGYVTKKMYEIDGKKANAYY 137
+LY + N +EKLWG G + + YV YV +N
Sbjct 197 KLYIPNSN-------IEKLWGKGFTSTKRLKNSDNVSAYVMAYV-----------SNVEI 238
Query 138 ELGQQKPFACMSLKPGLGDAY 158
EL ++ P GD +
Sbjct 239 ELKSSDILTKANVHPVYGDIF 259
> obr:102709054 aldehyde dehydrogenase family 2 member B7, mitochondrial-like
Length=551
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/89 (27%), Positives = 39/89 (44%), Gaps = 2/89 (2%)
Query 138 ELGQQKPFACMSLKPGLGDAYYQEHKEEIWKQGYIQCTNGKQAQIPRYYEKMMEKENPER 197
ELG + PF M + A H+ + QG C + R Y++ +EK
Sbjct 318 ELGGKSPFIVMD-DADVDQAVELAHRALFFNQGQCCCAGSRTFVHERVYDEFVEKAKARA 376
Query 198 LWRIKQNRQRKAIEQKRLQFEGKDYKTQL 226
L R+ + R+ +EQ Q +G+ +K L
Sbjct 377 LQRVVGDPFRRGVEQGP-QIDGEQFKKIL 404
> tmb:Thimo_1353 c-type cytochrome biogenesis protein CcmF
Length=661
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/94 (30%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query 101 NGQIQIAQAVPETYRYVAGYVTKKMYEID-GKKANAYYELGQQKPFACMSLKPGLGDAYY 159
+G Q+A VPE YVA T ID G + Y LG+ SL+ YY
Sbjct 562 DGDRQVALLVPEKRTYVASTQTMTEASIDAGLLRDIYVSLGEPLEVGAWSLR-----IYY 616
Query 160 QEHKEEIWKQGYIQCTNGKQAQIPRYYEKMMEKE 193
+ + IW G + T G A R Y +
Sbjct 617 KPYVRWIWLGGLLMATGGVLAITDRRYRAATQAS 650
> ene:ENT_01800 hypothetical protein
Length=270
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (46%), Gaps = 27/124 (22%)
Query 24 ESVQTLLYTD--VQKFLKRLRKAYKSRLRFFCAGEYG----EQTARPHYHMILYGWEPTD 77
E++ ++ Y + +KF++RL + K R + CA ++ HYH++ +
Sbjct 102 ENILSVDYANNEFKKFIQRLNRRLKKRNQ--CAKYLATWEKQKRGSIHYHVVFFSL---- 155
Query 78 LKQLYKIHHNGYYTSEWLEKLWGNGQIQI----AQAVPETYRYVAGYVTKKMYEIDGKKA 133
GY + LEK+W NG ++I +V RY++ Y +K + EI K
Sbjct 156 ----------GYIKNSELEKIWQNGFVKINKVDVDSVENRGRYLSKYFSKDL-EIKEHKK 204
Query 134 NAYY 137
A++
Sbjct 205 KAFF 208
> cep:Cri9333_4067 hypothetical protein
Length=836
Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (55%), Gaps = 7/64 (11%)
Query 79 KQLYKIHHNGYYTSEWLEKLWGNGQIQIAQAVPETYRYVAGYVTKKMYEIDGKKANAYYE 138
K++YKI + ++ L+K W N +I+Q +P+TY+ +M E+ GK A +
Sbjct 3 KKIYKIFEDVEVKAKLLDKCWKNFSTEISQHLPDTYQ-------PEMQELSGKLEEALTK 55
Query 139 LGQQ 142
LG +
Sbjct 56 LGDE 59
> gmx:100781426 auxilin-related protein 2-like
Length=934
Score = 35.8 bits (81), Expect = 8.9, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (50%), Gaps = 6/113 (5%)
Query 129 DGKKANAYY---ELGQQKPFACMSLKPGLGDAYYQEHKEEIWKQGYIQCTNGKQAQIPRY 185
D + AN + EL A M +A ++ H +E+ ++ Y + K+A
Sbjct 483 DNESANGFLPDEELEMNSAAAAMKEAMDRAEAKFR-HAKEVREREYSKAARSKEAVQMEK 541
Query 186 YEKMM--EKENPERLWRIKQNRQRKAIEQKRLQFEGKDYKTQLETKERVTKKQ 236
E+ + E+EN ERL R +Q ++R+ EQ+RL E ++ + + + ER +Q
Sbjct 542 DERTVLEERENQERLDRERQQKEREEKEQRRLMKEREEKEREQQRLERERARQ 594
Lambda K H a alpha
0.318 0.134 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 340823785461