bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-3_CDS_annotation_glimmer3.pl_2_4
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
fve:101314332 capsid protein VP1-like 43.9 0.085
stv:V470_09830 capsid protein 43.5 0.13
vni:VIBNI_B0404 hypothetical protein 40.4 1.3
lgi:LOTGIDRAFT_116870 hypothetical protein 38.5 2.7
lgi:LOTGIDRAFT_152898 hypothetical protein 38.9 4.2
pkn:PKH_131040 Heat shock protein DnaJ, Pfj4-like protein 37.7 4.9
pcy:PCYB_132010 DnaJ domain containing protein 37.7 5.4
pvx:PVX_084600 DnaJ domain containing protein 37.4 6.9
> fve:101314332 capsid protein VP1-like
Length=421
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query 275 DYFNGVLPTPQFGSESV-VSLSQNADVY----TGFDKSQWQTLDGSAFPSGSVSSSNSDR 329
DYF LP PQ G +V + L +A + +G D T G+ + + S+ S
Sbjct 226 DYFTSALPWPQKGGTAVSLPLGTSAPIAFSGASGSDVGVISTTQGNLIKN--MYSTGSGT 283
Query 330 SLTANGKSIEHVHILPSGSITSSLSIAALRQATALQKYKEIQLANDPDFESQIEAHFGI- 388
SL G + + S ++ +I LRQ+ +QK E + I +HFG+
Sbjct 284 SLKI-GSATVATGLYADLSAATAATINQLRQSFQIQKLLERDARGGTRYTEIIRSHFGVA 342
Query 389 KPKHDMHKSRFIGGSSSMIDINPV 412
P + + ++GG S+ I+I P+
Sbjct 343 SPDARLQRPEYLGGGSTPINIAPI 366
> stv:V470_09830 capsid protein
Length=427
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 62/152 (41%), Gaps = 14/152 (9%)
Query 13 LKNKTSRNSFDLSHRNLFTAKVGELLPCFVQEVNPGDSIKLDSSYFTRTAPLQTAAFTRL 72
++ R DLSH ++G L+ V GDS ++D+ R +PL+
Sbjct 4 IQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDS 63
Query 73 RENVQYFFVPYQCLWKYFEGQVKNMTKNANGGDISQIATSPFAN-----AKVSTEMPFIS 127
++ F+VP++ + Y E +K M N + + T+ + + ++ + I
Sbjct 64 TVDIFTFYVPHRHV--YGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIP 121
Query 128 YTALHAYLNKLLNYVD-------SSANPTELS 152
YLN NY + ANP EL+
Sbjct 122 KHLFQGYLNIYNNYFKAPWMPDRTEANPNELN 153
> vni:VIBNI_B0404 hypothetical protein
Length=797
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/224 (22%), Positives = 95/224 (42%), Gaps = 25/224 (11%)
Query 246 DLSSKFSSISVSDLGKSNMLD-------MRFSNLPLDYFNGVLPTPQFGSESVVSLSQNA 298
D +++++ I V+D G S + RF +DY G+ P SE + +S N
Sbjct 320 DTANQWNKIWVADAGDSLIPQAMTAPDGTRFGGSQIDYAGGITLNPYNSSE--LFISTNV 377
Query 299 DVYTGFDKSQWQTLDGSAFPSGSVSSSNSDRSLTANGKSIEHVHILPSGSITSSLSIAAL 358
+ TG D S+++ GS SG +LT++ + +P G+ SS +
Sbjct 378 NPTTGLDTSKFEIYKGSFNGSGFTW-----EALTSDSPDNNYRPFVPFGASNSSEQVVIW 432
Query 359 ---RQATALQKYKEIQLANDPDFESQIEAHFGIKPKHDMHKSRFIGGSSSMIDINPVVNQ 415
+ + + YK +Q + + ++ I K+ + +I G+ ++++P +
Sbjct 433 FTGKYESFVNGYKNLQSTGERYYFKGYDSK--IVGKYISRQGSYIAGTCRAVEVSPSNSN 490
Query 416 NLGAGQNQDNQAVTKAAPTGQGGASFKFTADTFGVVIGIYRCTP 459
G +QD + T + G S T +++ + YR TP
Sbjct 491 TTSYGGSQDQGSATFS------GNSITLTGNSWKAIDIDYRVTP 528
> lgi:LOTGIDRAFT_116870 hypothetical protein
Length=207
Score = 38.5 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 27/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query 83 YQCLW-KYFEGQVKNMTKNANGGDISQIATSPFANAKVSTEMPFISYTALHAYL--NKLL 139
++C+ K EG N + NA GG ++ + SP A S +P + + + + L+
Sbjct 67 FKCIHDKIPEGLCTNSSYNAGGGTCNKASCSPKAQINGSRFIPQGNEEEMASVIIRTPLM 126
Query 140 NYVDSSANPTELSNPFLYNNGCWRHAESAKLLQLLGYG 177
Y+D+S + EL +Y++ + LLQ++GYG
Sbjct 127 VYIDASQSSFELYQSGIYSDAGCSQIQLNHLLQIVGYG 164
> lgi:LOTGIDRAFT_152898 hypothetical protein
Length=1107
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/92 (35%), Positives = 44/92 (48%), Gaps = 12/92 (13%)
Query 470 RTLLKTDASD--FVIPELDS--IGMQQTFQCELFAPTSQMTASAPDKRKYDMSRTFGYAP 525
R ++++ ASD F ELD I ++ + + TSQ A DK YD SR P
Sbjct 738 RNIIRSVASDTLFKDKELDELYILFKEEYLTSCYWRTSQQPAETADK--YDPSR-----P 790
Query 526 RYSEYKVSFDRYNGAFCDTLKSWVTGFNTHIF 557
Y YKV FD++ F +L W TG + I
Sbjct 791 YYDLYKVDFDQFKTMFL-SLAPWATGVHAGIL 821
> pkn:PKH_131040 Heat shock protein DnaJ, Pfj4-like protein
Length=245
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/107 (31%), Positives = 47/107 (44%), Gaps = 6/107 (6%)
Query 251 FSSISVSDLGKSNMLDMRFSNLPLDYFNGVLPTPQFGSESVVSLSQNADVYTGFDKSQWQ 310
FS + S G S M SN P D F G FGS + + +T + S
Sbjct 117 FSEVMGSSFGDSRRGRMARSNDPFDNFFGSSFNISFGSSNFDTFMDGGSSFTSVETS--- 173
Query 311 TLDGSAFPSGSVSSSNSDRSLTANGK---SIEHVHILPSGSITSSLS 354
T +G F + V +S S + NGK IE V LP+G+I +++
Sbjct 174 TSNGGKFKNRFVKTSTSKTTSIINGKRVTRIETVKTLPNGTIERTVT 220
> pcy:PCYB_132010 DnaJ domain containing protein
Length=245
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/107 (30%), Positives = 46/107 (43%), Gaps = 6/107 (6%)
Query 251 FSSISVSDLGKSNMLDMRFSNLPLDYFNGVLPTPQFGSESVVSLSQNADVYTGFDKSQWQ 310
FS + S G M SN P D F G FGS + + +T + S
Sbjct 117 FSEVMGSSFGDKRRGRMARSNDPFDNFFGSSFNISFGSSNFDNFMDGGSCFTSVETS--- 173
Query 311 TLDGSAFPSGSVSSSNSDRSLTANGK---SIEHVHILPSGSITSSLS 354
T +G F + V +S S + NGK IE V LP+G+I +++
Sbjct 174 TSNGGKFKNRFVKTSTSKTTSVVNGKRVTRIETVKTLPNGTIERTVT 220
> pvx:PVX_084600 DnaJ domain containing protein
Length=245
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/107 (30%), Positives = 46/107 (43%), Gaps = 6/107 (6%)
Query 251 FSSISVSDLGKSNMLDMRFSNLPLDYFNGVLPTPQFGSESVVSLSQNADVYTGFDKSQWQ 310
FS + S G M SN P D F G FGS + + +T + S
Sbjct 117 FSEVMGSSFGDKRRGRMARSNDPFDSFFGSSFNISFGSSNFDNFMDGGSCFTSVETS--- 173
Query 311 TLDGSAFPSGSVSSSNSDRSLTANGK---SIEHVHILPSGSITSSLS 354
T +G F + V +S S + NGK IE V LP+G+I +++
Sbjct 174 TSNGGKFKNRFVKTSTSKTTSIVNGKRVTRIETVKTLPNGTIERTVT 220
Lambda K H a alpha
0.318 0.132 0.394 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1451446305921