bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-3_CDS_annotation_glimmer3.pl_2_6

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  brh:RBRH_00511  transcriptional regulator                           45.4    0.017


> brh:RBRH_00511  transcriptional regulator
Length=585

 Score = 45.4 bits (106),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (50%), Gaps = 19/125 (15%)

Query  247  LPREKQAGLAATLQ---------------NVRTMVSQMHLNYAQAKNAYAMAALNYAQEA  291
            LP E QAGL   LQ               +VR ++S  H++   A +A    +  Y +  
Sbjct  243  LPLESQAGLLRFLQERTIQRLGGHDAISVDVR-IISATHVDLEAAVSAGRFRSDLYHRLC  301

Query  292  GVRLNNK-LQDSIFDLSVGMAENQYEQGRADAAQHIFGFNLPSANA-FVYSQAGNVRQVF  349
             +RL    L+    D+ + +A+  +E+ R D+ +HI GF+  + NA + YS  GNVR++ 
Sbjct  302  VLRLEEPPLRGRGRDIEL-LAQRMFERYRGDSPRHIRGFSAAALNAMYRYSWPGNVRELI  360

Query  350  NKKER  354
            N+  R
Sbjct  361  NRVRR  365



Lambda      K        H        a         alpha
   0.311    0.124    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 710007207144