bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-6_CDS_annotation_glimmer3.pl_2_7
Length=54
Score E
Sequences producing significant alignments: (Bits) Value
ssus:NJAUSS_0866 DegV domain-containing protein SP 34.7 0.76
sup:YYK_03685 hypothetical protein 34.7 0.76
suo:SSU12_0769 hypothetical protein 34.7 0.76
sui:SSUJS14_0908 hypothetical protein 34.7 0.76
ssw:SSGZ1_0807 DegV 34.7 0.76
ssf:SSUA7_0766 hypothetical protein 34.7 0.76
sss:SSUSC84_0733 DegV family protein 34.7 0.76
ssi:SSU0770 DegV family protein 34.7 0.76
ssb:SSUBM407_1065 DegV family protein 34.7 0.76
ssv:SSU98_0827 hypothetical protein 34.7 0.76
ssu:SSU05_0827 hypothetical protein 34.7 0.76
ssui:T15_1134 degV family protein 34.3 0.85
ssut:TL13_0990 DegV family protein 34.3 0.85
ssuy:YB51_4755 DegV family protein 34.3 0.86
ssq:SSUD9_0975 degV family protein 34.3 0.86
sst:SSUST3_0962 degV family protein 34.3 0.86
srp:SSUST1_1011 degV family protein 34.3 0.90
ssk:SSUD12_0962 degV family protein 33.5 1.6
csg:Cylst_6079 hypothetical protein 30.4 5.5
> ssus:NJAUSS_0866 DegV domain-containing protein SP
Length=283
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKRQLEEAGVGSDLPIV 259
> sup:YYK_03685 hypothetical protein
Length=283
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKRQLEEAGVGSDLPIV 259
> suo:SSU12_0769 hypothetical protein
Length=283
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKRQLEEAGVGSDLPIV 259
> sui:SSUJS14_0908 hypothetical protein
Length=283
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKRQLEEAGVGSDLPIV 259
> ssw:SSGZ1_0807 DegV
Length=283
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKRQLEEAGVGSDLPIV 259
> ssf:SSUA7_0766 hypothetical protein
Length=283
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKRQLEEAGVGSDLPIV 259
> sss:SSUSC84_0733 DegV family protein
Length=283
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKRQLEEAGVGSDLPIV 259
> ssi:SSU0770 DegV family protein
Length=283
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKRQLEEAGVGSDLPIV 259
> ssb:SSUBM407_1065 DegV family protein
Length=283
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKRQLEEAGVGSDLPIV 259
> ssv:SSU98_0827 hypothetical protein
Length=283
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKRQLEEAGVGSDLPIV 259
> ssu:SSU05_0827 hypothetical protein
Length=283
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKRQLEEAGVGSDLPIV 259
> ssui:T15_1134 degV family protein
Length=283
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKQQLEEAGVGSDLPIV 259
> ssut:TL13_0990 DegV family protein
Length=283
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKQQLEEAGVGSDLPIV 259
> ssuy:YB51_4755 DegV family protein
Length=283
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKQQLEEAGVGSDLPIV 259
> ssq:SSUD9_0975 degV family protein
Length=283
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKQQLEEAGVGSDLPIV 259
> sst:SSUST3_0962 degV family protein
Length=283
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKQQLEEAGVGSDLPIV 259
> srp:SSUST1_1011 degV family protein
Length=283
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTTEGQYQIAIIHANAPQKAENFKQQLEEAGVGSDLPIV 259
> ssk:SSUD12_0962 degV family protein
Length=283
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 3 KGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLI 50
K +L+ ++ +T ++ I+I N P AE F++QL++ VG D+ ++
Sbjct 212 KRLLEILQEQTKEGQYQIAIIHANAPQKAENFKQQLEEAGVGSDLPIV 259
> csg:Cylst_6079 hypothetical protein
Length=80
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 0/48 (0%)
Query 1 MYKGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVL 48
M+K + ++ ET + E G+ T E R++LQD G+ +L
Sbjct 10 MHKATYELLEDETFYGEIPECPGVLANAETLEACREELQDALEGWIIL 57
Lambda K H a alpha
0.326 0.145 0.401 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 127911952116