bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-6_CDS_annotation_glimmer3.pl_2_8

Length=65
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  pte:PTT_15305  hypothetical protein                                 35.0    0.68
  nno:NONO_c20370  hypothetical protein                               30.8    3.6
  clt:CM240_3298  hypothetical protein                                32.0    6.5


> pte:PTT_15305  hypothetical protein
Length=380

 Score = 35.0 bits (79),  Expect = 0.68, Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (5%)

Query  8   WIELVKLISTFIIGVITALTVQSCTASMSVFWKNQNSKQDSQQT---TQQEVDSVTIKPQ  64
           WIE  KL  TFI+  + +  V + TASM ++ +  + +Q  +Q    ++Q+ + + +K Q
Sbjct  6   WIEEEKLKKTFIVATLASTLVGTFTASMGLWERVADRRQQHRQKAKDSKQDGEIIELKKQ  65

Query  65  F  65
           F
Sbjct  66  F  66


> nno:NONO_c20370  hypothetical protein
Length=59

 Score = 30.8 bits (68),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 10/44 (23%), Positives = 26/44 (59%), Gaps = 0/44 (0%)

Query  21  GVITALTVQSCTASMSVFWKNQNSKQDSQQTTQQEVDSVTIKPQ  64
           G++ AL++      ++VFW  +NS+ +S+ +    +D + ++ +
Sbjct  4   GLVLALSIPLGVFLLAVFWPERNSRNESRNSVSAILDRIALEDR  47


> clt:CM240_3298  hypothetical protein
Length=263

 Score = 32.0 bits (71),  Expect = 6.5, Method: Composition-based stats.
 Identities = 19/58 (33%), Positives = 33/58 (57%), Gaps = 5/58 (9%)

Query  13  KLISTFIIGVITALTVQSCTASMSVFWKN----QNSKQDSQQT-TQQEVDSVTIKPQF  65
           K I +  IGVI ALT+ SC   + +  +N    +NS+ D  +T + +++D++ I  Q 
Sbjct  3   KRIVSIFIGVILALTLTSCAVKVGIEPRNKIAHKNSELDKDETLSLEDIDNININIQL  60



Lambda      K        H        a         alpha
   0.316    0.124    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128662101624