BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eace_1916_orf1
         (113 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|149190408|ref|ZP_01868680.1| transcriptional regulator, LysR ...    34     5.8  

>gi|149190408|ref|ZP_01868680.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148835787|gb|EDL52752.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 293

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query: 10  GKEMSFATRTASSQSDAGNSIEPLHRRSLSNRSCLHTTSTRVVWGRADRLRSAPDGRAGA 69
           G E+   TR     +DAG+++ P  R  L+    L++ + +   G +D++R A D    +
Sbjct: 44  GVELFERTRNRLVLNDAGSALLPDCRNILNMAESLYSKAEQFRQGDSDKIRIAYDDTLPS 103

Query: 70  SFRTALVPARSFSLPLLGPPVLKATPSGAPSASFRN 105
           SF    + A S   P +   V+KA+ +  P+    N
Sbjct: 104 SFWRKQLVALSDEFPHVSLTVIKASSADIPTLVREN 139


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.313    0.124    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,113,727,012
Number of extensions: 41328932
Number of successful extensions: 84701
Number of sequences better than 10.0: 26
Number of HSP's gapped: 86217
Number of HSP's successfully gapped: 26
Length of query: 113
Length of database: 5,058,227,080
Length adjustment: 81
Effective length of query: 32
Effective length of database: 3,861,230,788
Effective search space: 123559385216
Effective search space used: 123559385216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 76 (33.9 bits)