BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Emax_0609_orf1
         (178 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|326391509|ref|ZP_08213042.1| lysine 2,3-aminomutase YodO fami...    35     3.3  
gi|219848065|ref|YP_002462498.1| beta-lactamase domain-containin...    35     5.4  
gi|307265361|ref|ZP_07546918.1| lysine 2,3-aminomutase YodO fami...    34     9.7  

>gi|326391509|ref|ZP_08213042.1| lysine 2,3-aminomutase YodO family protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992438|gb|EGD50897.1| lysine 2,3-aminomutase YodO family protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 423

 Score = 35.4 bits (80), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 48  SLAQLLPLPRCVKETTSRTIGSLRPCLLFPHPSLPPYIISCLKTNTPNGPLSRASIGTQS 107
            L + LPL +  +E  S+T+ +LR        ++ PY +S +  N PN P+ + ++ T +
Sbjct: 40  ELKKYLPLTQEEEEAISKTLQTLRM-------AITPYYLSLIDPNDPNDPIRKRAVPTIN 92

Query: 108 SFFRST 113
             +R++
Sbjct: 93  ELYRAS 98


>gi|219848065|ref|YP_002462498.1| beta-lactamase domain-containing protein [Chloroflexus aggregans
           DSM 9485]
 gi|219542324|gb|ACL24062.1| beta-lactamase domain protein [Chloroflexus aggregans DSM 9485]
          Length = 395

 Score = 34.7 bits (78), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 138 AVISTWQAALLSLFRHSQAYALLHAFLHEVLTTLMITHVH 177
           A+IS  QAAL+   RH+  Y  L       LTT++ THVH
Sbjct: 143 AIISDGQAALIDPLRHTNVYRELIEGAGAKLTTILDTHVH 182


>gi|307265361|ref|ZP_07546918.1| lysine 2,3-aminomutase YodO family protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919645|gb|EFN49862.1| lysine 2,3-aminomutase YodO family protein [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 423

 Score = 33.9 bits (76), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 48  SLAQLLPLPRCVKETTSRTIGSLRPCLLFPHPSLPPYIISCLKTNTPNGPLSRASIGTQS 107
            L + LPL +  ++  S+T+ +LR        ++ PY +S +  N PN P+ + ++ T +
Sbjct: 40  ELKKYLPLTQEEEQAISKTLQTLRM-------AITPYYLSLIDPNDPNDPIRKRAVPTIN 92

Query: 108 SFFRST 113
             +R++
Sbjct: 93  ELYRAS 98


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.327    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,579,236,277
Number of extensions: 54812247
Number of successful extensions: 132519
Number of sequences better than 10.0: 6
Number of HSP's gapped: 133226
Number of HSP's successfully gapped: 6
Length of query: 178
Length of database: 5,058,227,080
Length adjustment: 130
Effective length of query: 48
Effective length of database: 3,137,121,920
Effective search space: 150581852160
Effective search space used: 150581852160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 76 (33.9 bits)