Page for EGene annotations

E. tenella EGene annotations

Sequences

FASTA sequence: Eten_5525
Eten_5525_ORFs: DNA, Protein

Annotation

Without ORF selection: FT, extended FT, GFF3
With ORF selection: FT, extended FT, GFF3

Orthology relations of the selected ORF

Evidences

Program ORF1
SignalP No hits

TMHMM No hits

Phobius No hits

DGPI No hits

BLAST No hits

RPS-BLAST WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

InterProScan IPR010916 IPR011046 IPR001680 IPR015943

GO terms No hits

KOG KOG0274 - R Cdc4 and related F-box and WD-40 proteins

eggNOG No hits

KEGG No hits

Organism	Protein	Confidence value	Relation	KOG result
None	None	None	None	None

Program	ORF1
SignalP	No hits
TMHMM	No hits
Phobius	No hits
DGPI	No hits
BLAST	No hits
RPS-BLAST	WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment
InterProScan	IPR010916 IPR011046 IPR001680 IPR015943
GO terms	No hits
KOG	KOG0274 - R Cdc4 and related F-box and WD-40 proteins
eggNOG	No hits
KEGG	No hits