BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_4440_orf5
(167 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|291229244|ref|XP_002734585.1| PREDICTED: predicted protein-li... 43 0.019
gi|156376618|ref|XP_001630456.1| predicted protein [Nematostella... 41 0.061
gi|260797833|ref|XP_002593905.1| hypothetical protein BRAFLDRAFT... 35 4.8
>gi|291229244|ref|XP_002734585.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 501
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVS 160
YT ++ C YT + CLYT + CLYT ++ C+YT ++ C+YT S
Sbjct: 424 YTTSSVSCLYTTSSVSCLYTTSSVSCLYTTSSVTCLYTTSSVSCLYTTS 472
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVS 160
YT ++ C YT + CLYT + CLYT ++ C+YT ++ C+YT S
Sbjct: 370 YTTSSVTCLYTTSSVSCLYTTSSVSCLYTTSSVSCLYTTSSVTCLYTTS 418
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVS 160
YT ++ C YT + CLYT + CLYT ++ C+YT ++ C+YT S
Sbjct: 379 YTTSSVSCLYTTSSVSCLYTTSSVSCLYTTSSVTCLYTTSSVTCLYTTS 427
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVS 160
YT ++ C YT + CLYT + CLYT ++ C+YT ++ C+YT S
Sbjct: 406 YTTSSVTCLYTTSSVTCLYTTSSVSCLYTTSSVSCLYTTSSVSCLYTTS 454
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVS 160
YT ++ C YT + CLYT + CLYT ++ C+YT ++ C+YT S
Sbjct: 415 YTTSSVTCLYTTSSVSCLYTTSSVSCLYTTSSVSCLYTTSSVTCLYTTS 463
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVS 160
YT ++ C YT + CLYT + CLYT ++ C+YT ++ C+YT S
Sbjct: 316 YTTSSVACLYTTSSVSCLYTTSSVSCLYTTSSVTCLYTTSSVACLYTTS 364
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVS 160
YT ++ C YT + CLYT + CLYT ++ C+YT ++ C+YT S
Sbjct: 237 YTTSSVTCLYTTSSVTCLYTTSSVSCLYTTSSVTCLYTTSSVTCLYTTS 285
Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVS 160
YT ++ C YT + CLYT + CLYT ++ C+YT ++ C+YT S
Sbjct: 210 YTTSSVTCLYTTCSVSCLYTTSSVACLYTTSSVTCLYTTSSVTCLYTTS 258
Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVS 160
YT ++ C YT + CLYT + CLYT ++ C+YT ++ C+YT S
Sbjct: 201 YTTSSVTCLYTTSSVTCLYTTCSVSCLYTTSSVACLYTTSSVTCLYTTS 249
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYT 158
YT ++ C YT + CLYT + CLYT ++ C+YT ++ C++T
Sbjct: 433 YTTSSVSCLYTTSSVSCLYTTSSVTCLYTTSSVSCLYTTSSVFCVFT 479
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 114 LETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVS 160
+ ++ C YT + CLYT + CLYT ++ C+YT ++ C+YT S
Sbjct: 194 MTSVTCLYTTSSVTCLYTTSSVTCLYTTCSVSCLYTTSSVACLYTTS 240
>gi|156376618|ref|XP_001630456.1| predicted protein [Nematostella vectensis]
gi|156217478|gb|EDO38393.1| predicted protein [Nematostella vectensis]
Length = 906
Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 90 LQVYVHPTHSRVLIHPMHSRSTYTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYT 149
L+ +P + +P +R Y + +RC Y RC Y +C Y +RC Y
Sbjct: 424 LEKCDYPDKNMRCDYPDKNRCDYPDKNMRCDYPDKNMRCDYPDKNMRCGYPDKNMRCDYP 483
Query: 150 PRTLRCMY 157
+ +RC Y
Sbjct: 484 DKNMRCDY 491
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 95 HPTHSRVLIHPMHSRSTYTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLR 154
+P +R + R Y + +RC Y RC Y P +C Y +RC Y + +R
Sbjct: 571 YPDKNRCDYPDKNMRCDYPDKNMRCDYPDKNMRCDY-PDKNRCDYPDKNMRCDYPDKNMR 629
Query: 155 CMY 157
C Y
Sbjct: 630 CDY 632
Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 109 RSTYTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMY 157
R Y + +RC Y RC Y +C Y +RC Y + +RC Y
Sbjct: 506 RCDYPDKNMRCDYPDKNIRCDYPDKNMRCDYPDKNMRCDYPDKNMRCDY 554
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 95 HPTHSRVLIHPMHSRSTYTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLR 154
+P +R + R Y + +RC Y RC Y +C Y +RC Y + +R
Sbjct: 438 YPDKNRCDYPDKNMRCDYPDKNMRCDYPDKNMRCGYPDKNMRCDYPDKNMRCDYPDKNMR 497
Query: 155 CMY 157
C Y
Sbjct: 498 CHY 500
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 95 HPTHSRVLIHPMHSRSTYTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLR 154
+P + +P +R Y + +RC Y RC Y +C Y +RC Y + +R
Sbjct: 545 YPDKNMRCDYPDKNRCDYPDKNMRCDYPDKN-RCDYPDKNMRCDYPDKNMRCDYPDKNMR 603
Query: 155 CMY 157
C Y
Sbjct: 604 CDY 606
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 109 RSTYTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMY 157
R Y + +RC Y RC Y +C Y +RC Y + +RC Y
Sbjct: 479 RCDYPDKNMRCDYPDKNMRCHYPDKNMRCDYPDKNMRCDYPDKNIRCDY 527
Score = 37.4 bits (85), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 109 RSTYTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMY 157
R Y + +RC Y RC Y +C Y +RC Y + +RC Y
Sbjct: 461 RCDYPDKNMRCGYPDKNMRCDYPDKNMRCDYPDKNMRCHYPDKNMRCDY 509
Score = 37.4 bits (85), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMY 157
Y + +RC Y RC Y +C Y +RC Y + +RC Y
Sbjct: 500 YPDKNMRCDYPDKNMRCDYPDKNIRCDYPDKNMRCDYPDKNMRCDY 545
Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 109 RSTYTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMY 157
R Y + +RC Y RC Y +C Y +RC Y + +RC Y
Sbjct: 470 RCGYPDKNMRCDYPDKNMRCDYPDKNMRCHYPDKNMRCDYPDKNMRCDY 518
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 109 RSTYTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMY 157
R Y + +RC Y RC Y +C Y +RC Y + +RC Y
Sbjct: 488 RCDYPDKNMRCHYPDKNMRCDYPDKNMRCDYPDKNIRCDYPDKNMRCDY 536
>gi|260797833|ref|XP_002593905.1| hypothetical protein BRAFLDRAFT_234848 [Branchiostoma floridae]
gi|229279137|gb|EEN49916.1| hypothetical protein BRAFLDRAFT_234848 [Branchiostoma floridae]
Length = 278
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 82 YSISTATCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 134
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 9 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISA-GTC 61
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 91 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 143
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 100 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 152
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 109 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 161
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 118 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 170
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 127 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 179
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 136 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 188
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 145 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 197
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 154 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 206
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 163 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 215
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 172 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 224
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 181 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 233
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 190 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 242
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 199 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 251
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 208 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 260
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 217 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 269
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 YTLETLRCTYTLYTPRCLYTPHTPKCLYTPHTLRCMYTPRTLRCMYTVSMWGVC 165
Y++ T C Y++ T C Y+ T C Y+ T C Y+ T C Y++S G C
Sbjct: 226 YSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSISTGTCKYSIST-GTC 278
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.326 0.135 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,672,053,790
Number of extensions: 60505598
Number of successful extensions: 224683
Number of sequences better than 10.0: 62
Number of HSP's gapped: 225367
Number of HSP's successfully gapped: 160
Length of query: 167
Length of database: 5,058,227,080
Length adjustment: 128
Effective length of query: 39
Effective length of database: 3,166,677,384
Effective search space: 123500417976
Effective search space used: 123500417976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 76 (33.9 bits)