BLASTP 2.2.24 [Aug-08-2010] Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= Eten_4640_orf1 (139 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 14,777,732 sequences; 5,058,227,080 total letters
Score E Sequences producing significant alignments: (bits) Value gi|308811596|ref|XP_003083106.1| unnamed protein product [Ostreo... 41 0.048 >gi|308811596|ref|XP_003083106.1| unnamed protein product [Ostreococcus tauri] gi|116054984|emb|CAL57061.1| unnamed protein product [Ostreococcus tauri] Length = 272 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 35 VGAQASGEAHFLQPFEVFPPKGVQVVRGNGGGLSVLHVLLPGQEPGRDAELRRTPHDRH 93 V +Q S ++ LQ EV V++V + L++L ++L QEP R++EL R HD H Sbjct: 53 VVSQTSVVSNLLQTLEVVAQLRVELVGHHLRELAILEIVLAVQEPIRNSELSRVGHDHH 111 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Jul 22, 2011 4:42 PM Number of letters in database: 5,058,227,080 Number of sequences in database: 14,777,732 Lambda K H 0.315 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 14777732 Number of Hits to DB: 992,539,775 Number of extensions: 34965050 Number of successful extensions: 52996 Number of sequences better than 10.0: 1 Number of HSP's gapped: 53158 Number of HSP's successfully gapped: 1 Length of query: 139 Length of database: 5,058,227,080 Length adjustment: 103 Effective length of query: 36 Effective length of database: 3,536,120,684 Effective search space: 127300344624 Effective search space used: 127300344624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 76 (33.9 bits)