BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_6707_orf1
(124 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|221504331|gb|EEE30006.1| conserved hypothetical protein [Toxo... 37 0.79
gi|221483645|gb|EEE21957.1| conserved hypothetical protein [Toxo... 37 0.83
gi|237841087|ref|XP_002369841.1| hypothetical protein TGME49_119... 37 0.83
gi|294056078|ref|YP_003549736.1| glycosyl transferase family 2 [... 35 4.2
gi|294625520|ref|ZP_06704148.1| conserved hypothetical protein [... 34 7.6
gi|325926326|ref|ZP_08187658.1| hypothetical protein XPE_1629 [X... 34 8.4
gi|294666080|ref|ZP_06731339.1| conserved hypothetical protein [... 34 8.4
gi|21243496|ref|NP_643078.1| hypothetical protein XAC2769 [Xanth... 34 8.6
gi|78048481|ref|YP_364656.1| hypothetical protein XCV2925 [Xanth... 34 9.0
>gi|221504331|gb|EEE30006.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 793
Score = 37.4 bits (85), Expect = 0.79, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 64 SLCSDASSGSAQHRSTADGSSRAAWDLLHLQHRARGGTLFLRTQGETQLHA 114
S+ SS AQ R + SSRA++ +H + R G LFLR + Q+H+
Sbjct: 726 SVHKSTSSAEAQRRVSGGPSSRASFACMHSEVRPVGDRLFLRPENVIQMHS 776
>gi|221483645|gb|EEE21957.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 793
Score = 37.4 bits (85), Expect = 0.83, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 64 SLCSDASSGSAQHRSTADGSSRAAWDLLHLQHRARGGTLFLRTQGETQLHA 114
S+ SS AQ R + SSRA++ +H + R G LFLR + Q+H+
Sbjct: 726 SVHKSTSSAEAQRRVSGGPSSRASFACMHSEVRPVGDRLFLRPENVIQMHS 776
>gi|237841087|ref|XP_002369841.1| hypothetical protein TGME49_119640 [Toxoplasma gondii ME49]
gi|211967505|gb|EEB02701.1| hypothetical protein TGME49_119640 [Toxoplasma gondii ME49]
Length = 793
Score = 37.4 bits (85), Expect = 0.83, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 64 SLCSDASSGSAQHRSTADGSSRAAWDLLHLQHRARGGTLFLRTQGETQLHA 114
S+ SS AQ R + SSRA++ +H + R G LFLR + Q+H+
Sbjct: 726 SVHKSTSSAEAQRRVSGGPSSRASFACMHSEVRPVGDRLFLRPENVIQMHS 776
>gi|294056078|ref|YP_003549736.1| glycosyl transferase family 2 [Coraliomargarita akajimensis DSM
45221]
gi|293615411|gb|ADE55566.1| glycosyl transferase family 2 [Coraliomargarita akajimensis DSM
45221]
Length = 262
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 25 LRTLATTYDRPLGLYAFTTLSFPPSAYLPKVPEKPDLLWSLCSDASSGSAQHRSTADGSS 84
LR L + G+YA ++ PP +PK ++WS C+ A H+S A
Sbjct: 96 LRQLFADGEPAPGIYAVKLVTVPP---VPK-----GVVWSNCTIAWRNKLYHKSVARMPE 147
Query: 85 RAAWDLLHL 93
AAWD L L
Sbjct: 148 HAAWDQLDL 156
>gi|294625520|ref|ZP_06704148.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292600189|gb|EFF44298.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 696
Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 60 DLLWSLCSDASSGSAQHRSTADGSSRAAWDLLHLQHRARGGTLFLRTQGETQ 111
D W L D SG A++R T + R L +QH R G L LR G Q
Sbjct: 77 DARWDLAFDQVSGQAEYRDTGFAAER-----LSVQHEGRSGELSLRAGGLVQ 123
>gi|325926326|ref|ZP_08187658.1| hypothetical protein XPE_1629 [Xanthomonas perforans 91-118]
gi|325543277|gb|EGD14708.1| hypothetical protein XPE_1629 [Xanthomonas perforans 91-118]
Length = 689
Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 60 DLLWSLCSDASSGSAQHRSTADGSSRAAWDLLHLQHRARGGTLFLRTQGETQ 111
D W L D SG A++R T + R L +QH R G L LR G Q
Sbjct: 70 DARWDLAFDQVSGQAEYRDTGFAAER-----LSVQHEGRSGELSLRAGGLVQ 116
>gi|294666080|ref|ZP_06731339.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292604139|gb|EFF47531.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 1306
Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 60 DLLWSLCSDASSGSAQHRSTADGSSRAAWDLLHLQHRARGGTLFLRTQGETQ 111
D W L D SG A++R T + R L +QH R G L LR G Q
Sbjct: 687 DARWDLAFDQVSGQAEYRDTGFAAER-----LSVQHEGRSGELSLRAGGLVQ 733
>gi|21243496|ref|NP_643078.1| hypothetical protein XAC2769 [Xanthomonas axonopodis pv. citri str.
306]
gi|21109056|gb|AAM37614.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 1306
Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 60 DLLWSLCSDASSGSAQHRSTADGSSRAAWDLLHLQHRARGGTLFLRTQGETQ 111
D W L D SG A++R T + R L +QH R G L LR G Q
Sbjct: 687 DARWDLAFDQVSGQAEYRDTGFAAER-----LSVQHEGRSGELSLRAGGLVQ 733
>gi|78048481|ref|YP_364656.1| hypothetical protein XCV2925 [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036911|emb|CAJ24604.1| hypothetical protein XCV2925 [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 689
Score = 33.9 bits (76), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 60 DLLWSLCSDASSGSAQHRSTADGSSRAAWDLLHLQHRARGGTLFLRTQGETQ 111
D W L D SG A++R T + R L +QH R G L LR G Q
Sbjct: 70 DARWDLAFDQVSGQAEYRDTGFAAER-----LSVQHEGRSGELSLRAGGLVQ 116
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.320 0.130 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,231,715,509
Number of extensions: 44655560
Number of successful extensions: 104111
Number of sequences better than 10.0: 12
Number of HSP's gapped: 105103
Number of HSP's successfully gapped: 12
Length of query: 124
Length of database: 5,058,227,080
Length adjustment: 90
Effective length of query: 34
Effective length of database: 3,728,231,200
Effective search space: 126759860800
Effective search space used: 126759860800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)