BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_8556_orf1
(162 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|221481989|gb|EEE20355.1| RNA helicase, putative [Toxoplasma g... 87 8e-16
gi|237836975|ref|XP_002367785.1| RNA helicase, putative [Toxopla... 87 9e-16
gi|221505063|gb|EEE30717.1| RNA helicase, putative [Toxoplasma g... 87 9e-16
gi|325116677|emb|CBZ52230.1| hypothetical protein NCLIV_020160 [... 85 4e-15
gi|168014437|ref|XP_001759758.1| predicted protein [Physcomitrel... 77 6e-13
gi|302854479|ref|XP_002958747.1| hypothetical protein VOLCADRAFT... 77 8e-13
gi|307103504|gb|EFN51763.1| hypothetical protein CHLNCDRAFT_5910... 76 2e-12
gi|302813999|ref|XP_002988684.1| hypothetical protein SELMODRAFT... 75 4e-12
gi|302809384|ref|XP_002986385.1| hypothetical protein SELMODRAFT... 75 5e-12
gi|167534053|ref|XP_001748705.1| hypothetical protein [Monosiga ... 73 1e-11
gi|225448554|ref|XP_002273715.1| PREDICTED: hypothetical protein... 72 3e-11
gi|297736552|emb|CBI25423.3| unnamed protein product [Vitis vini... 72 4e-11
gi|159474678|ref|XP_001695452.1| predicted protein [Chlamydomona... 71 4e-11
gi|224101199|ref|XP_002312182.1| predicted protein [Populus tric... 71 6e-11
gi|320169595|gb|EFW46494.1| DEAD box polypeptide 55 [Capsaspora ... 70 8e-11
gi|302783497|ref|XP_002973521.1| hypothetical protein SELMODRAFT... 70 8e-11
gi|255559531|ref|XP_002520785.1| dead box ATP-dependent RNA heli... 70 1e-10
gi|302787567|ref|XP_002975553.1| hypothetical protein SELMODRAFT... 70 1e-10
gi|300122648|emb|CBK23215.2| unnamed protein product [Blastocyst... 70 1e-10
gi|15217442|ref|NP_177293.1| DEAD-box ATP-dependent RNA helicase... 69 2e-10
gi|26451630|dbj|BAC42912.1| putative ATP-dependent RNA helicase ... 69 2e-10
gi|298714126|emb|CBJ27307.1| DEAD box helicase [Ectocarpus silic... 69 2e-10
gi|328772701|gb|EGF82739.1| hypothetical protein BATDEDRAFT_1910... 69 3e-10
gi|303280952|ref|XP_003059768.1| predicted protein [Micromonas p... 69 3e-10
gi|301118004|ref|XP_002906730.1| DEAD/DEAH box RNA helicase, put... 68 4e-10
gi|66802950|ref|XP_635318.1| hypothetical protein DDB_G0291588 [... 68 4e-10
gi|242051997|ref|XP_002455144.1| hypothetical protein SORBIDRAFT... 67 7e-10
gi|255087136|ref|XP_002505491.1| predicted protein [Micromonas s... 67 8e-10
gi|226499134|ref|NP_001147316.1| ATP-dependent rRNA helicase spb... 67 8e-10
gi|325179717|emb|CCA14120.1| DEAD/DEAH box RNA helicase putative... 67 9e-10
>gi|221481989|gb|EEE20355.1| RNA helicase, putative [Toxoplasma gondii GT1]
Length = 1064
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 46/73 (63%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VLLATDVAARGLDFPDV W +Q+DPPQNPEVFVH PHEDAY
Sbjct: 674 VLLATDVAARGLDFPDVDWTLQLDPPQNPEVFVHRIGRAARAGRSGCALLLLLPHEDAYL 733
Query: 85 AFLRNRRVPLCPF 97
FL+NR + + +
Sbjct: 734 PFLKNRGLSIAAY 746
>gi|237836975|ref|XP_002367785.1| RNA helicase, putative [Toxoplasma gondii ME49]
gi|211965449|gb|EEB00645.1| RNA helicase, putative [Toxoplasma gondii ME49]
Length = 1069
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 46/73 (63%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VLLATDVAARGLDFPDV W +Q+DPPQNPEVFVH PHEDAY
Sbjct: 679 VLLATDVAARGLDFPDVDWTLQLDPPQNPEVFVHRIGRAARAGRSGCALLLLLPHEDAYL 738
Query: 85 AFLRNRRVPLCPF 97
FL+NR + + +
Sbjct: 739 PFLKNRGLSIAAY 751
>gi|221505063|gb|EEE30717.1| RNA helicase, putative [Toxoplasma gondii VEG]
Length = 1076
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 46/73 (63%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VLLATDVAARGLDFPDV W +Q+DPPQNPEVFVH PHEDAY
Sbjct: 686 VLLATDVAARGLDFPDVDWTLQLDPPQNPEVFVHRIGRAARAGRSGCALLLLLPHEDAYL 745
Query: 85 AFLRNRRVPLCPF 97
FL+NR + + +
Sbjct: 746 PFLKNRGLSIAAY 758
>gi|325116677|emb|CBZ52230.1| hypothetical protein NCLIV_020160 [Neospora caninum Liverpool]
Length = 1103
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 46/75 (61%)
Query: 23 ALVLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDA 82
A VLLATD+AARGLDFP V W +Q+DPPQNP+VFVH P EDA
Sbjct: 701 AKVLLATDIAARGLDFPHVDWTLQLDPPQNPDVFVHRIGRAARAGRSGSALLLLLPQEDA 760
Query: 83 YEAFLRNRRVPLCPF 97
Y FL+NR + + PF
Sbjct: 761 YIPFLKNRGISIAPF 775
>gi|168014437|ref|XP_001759758.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688888|gb|EDQ75262.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 631
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 1 STRNAALSRFCGXXXXXXXXXGALVLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXX 60
+ R AL+ F G A +L+ TDVAARGLD P V WIIQ DPPQ+P VFVH
Sbjct: 309 AAREKALAMFSGMT--------AGLLVCTDVAARGLDIPGVDWIIQYDPPQDPNVFVHRV 360
Query: 61 XXXXXXXXXXXXXXXXXPHEDAYEAFLRNRRVPL 94
P EDAY FLR R+VP+
Sbjct: 361 GRTARMGQSGDALVFLLPKEDAYVEFLRIRKVPI 394
>gi|302854479|ref|XP_002958747.1| hypothetical protein VOLCADRAFT_108284 [Volvox carteri f.
nagariensis]
gi|300255922|gb|EFJ40203.1| hypothetical protein VOLCADRAFT_108284 [Volvox carteri f.
nagariensis]
Length = 1517
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 43/72 (59%)
Query: 23 ALVLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDA 82
A LLATD+AARGLD PDV W++Q+DPPQ+P FVH PHE+
Sbjct: 520 AGALLATDLAARGLDIPDVHWVVQLDPPQDPAAFVHRVGRTARMGRQGSALAYLQPHEEP 579
Query: 83 YEAFLRNRRVPL 94
Y FLR R++P+
Sbjct: 580 YLEFLRLRKIPI 591
>gi|307103504|gb|EFN51763.1| hypothetical protein CHLNCDRAFT_59105 [Chlorella variabilis]
Length = 355
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 41/70 (58%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VLL TDVAARGLD PDV+WI+Q DPPQ+P FVH PHE +Y
Sbjct: 123 VLLCTDVAARGLDIPDVQWIVQFDPPQDPSAFVHRVGRTARMGRSGNAVVYLFPHETSYV 182
Query: 85 AFLRNRRVPL 94
FL+ R +PL
Sbjct: 183 EFLKVRNIPL 192
>gi|302813999|ref|XP_002988684.1| hypothetical protein SELMODRAFT_128612 [Selaginella moellendorffii]
gi|300143505|gb|EFJ10195.1| hypothetical protein SELMODRAFT_128612 [Selaginella moellendorffii]
Length = 594
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 1 STRNAALSRFCGXXXXXXXXXGALVLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXX 60
S R AL +F A VL TDVAARGLD P V WI+Q DPPQ+P VFVH
Sbjct: 327 SVRVKALEKFTAMP--------AGVLFCTDVAARGLDIPGVDWIVQYDPPQDPNVFVHRV 378
Query: 61 XXXXXXXXXXXXXXXXXPHEDAYEAFLRNRRVPL 94
P EDAY FLR R VP+
Sbjct: 379 GRTARMGRAGDALVFLLPKEDAYAEFLRIRNVPI 412
>gi|302809384|ref|XP_002986385.1| hypothetical protein SELMODRAFT_123861 [Selaginella moellendorffii]
gi|300145921|gb|EFJ12594.1| hypothetical protein SELMODRAFT_123861 [Selaginella moellendorffii]
Length = 593
Score = 74.7 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 1 STRNAALSRFCGXXXXXXXXXGALVLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXX 60
S R AL +F A VL TDVAARGLD P V WI+Q DPPQ+P VFVH
Sbjct: 325 SVRVKALEKFTAMP--------AGVLFCTDVAARGLDIPGVDWIVQYDPPQDPNVFVHRV 376
Query: 61 XXXXXXXXXXXXXXXXXPHEDAYEAFLRNRRVPL 94
P EDAY FLR R VP+
Sbjct: 377 GRTARMGRAGDALVFLLPKEDAYAEFLRIRNVPI 410
>gi|167534053|ref|XP_001748705.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772946|gb|EDQ86592.1| predicted protein [Monosiga brevicollis MX1]
Length = 575
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 3 RNAALSRFCGXXXXXXXXXGALVLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXX 62
R + S FC GA +L++TD+AARGLD PDV W++Q DPPQ+P+ +VH
Sbjct: 279 RTSVFSTFCNTE-------GA-ILVSTDIAARGLDVPDVAWVLQYDPPQDPDAYVHRCGR 330
Query: 63 XXXXXXXXXXXXXXXPHEDAYEAFLRNRRVPL 94
PHED Y FL R +P+
Sbjct: 331 TARLGRQGRAVLFLQPHEDTYIDFLNVRNIPI 362
>gi|225448554|ref|XP_002273715.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 595
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 40/70 (57%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
+LL TDVAARGLD P V I+Q DPPQ+P VF+H P E+AY
Sbjct: 338 ILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARMGRQGSAVVFLLPKEEAYV 397
Query: 85 AFLRNRRVPL 94
FLR RRVPL
Sbjct: 398 EFLRIRRVPL 407
>gi|297736552|emb|CBI25423.3| unnamed protein product [Vitis vinifera]
Length = 576
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 40/70 (57%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
+LL TDVAARGLD P V I+Q DPPQ+P VF+H P E+AY
Sbjct: 338 ILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARMGRQGSAVVFLLPKEEAYV 397
Query: 85 AFLRNRRVPL 94
FLR RRVPL
Sbjct: 398 EFLRIRRVPL 407
>gi|159474678|ref|XP_001695452.1| predicted protein [Chlamydomonas reinhardtii]
gi|158275935|gb|EDP01710.1| predicted protein [Chlamydomonas reinhardtii]
Length = 581
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 41/72 (56%)
Query: 23 ALVLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDA 82
A VLL TD+AARGLD PDV WI+Q+DPPQ+P FVH E+
Sbjct: 327 AGVLLCTDLAARGLDIPDVHWILQLDPPQDPAAFVHRVGRTARMGRSGQALVYLTAAEEP 386
Query: 83 YEAFLRNRRVPL 94
Y FLR R+VPL
Sbjct: 387 YVEFLRLRKVPL 398
>gi|224101199|ref|XP_002312182.1| predicted protein [Populus trichocarpa]
gi|222852002|gb|EEE89549.1| predicted protein [Populus trichocarpa]
Length = 592
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 40/70 (57%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
+LL TDVAARGLD P V I+Q DPPQ+P VFVH P E+AY
Sbjct: 335 ILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGRQGSSIVFLLPKEEAYV 394
Query: 85 AFLRNRRVPL 94
FLR RRVPL
Sbjct: 395 EFLRIRRVPL 404
>gi|320169595|gb|EFW46494.1| DEAD box polypeptide 55 [Capsaspora owczarzaki ATCC 30864]
Length = 740
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 40/73 (54%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VL TDVAARGLD PDV W++Q DPPQ+P+ FVH P ED Y
Sbjct: 345 VLFCTDVAARGLDMPDVDWVLQYDPPQDPDAFVHRCGRTARLGKRGSALIFIRPKEDTYV 404
Query: 85 AFLRNRRVPLCPF 97
+FL R+ P+ F
Sbjct: 405 SFLAVRKSPVEEF 417
>gi|302783497|ref|XP_002973521.1| hypothetical protein SELMODRAFT_99934 [Selaginella moellendorffii]
gi|300158559|gb|EFJ25181.1| hypothetical protein SELMODRAFT_99934 [Selaginella moellendorffii]
Length = 539
Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 37/70 (52%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VL TDVAARGLD P V WI+Q DPPQ+P FVH P ED Y
Sbjct: 308 VLFCTDVAARGLDIPGVDWIVQYDPPQDPNTFVHRVGRTARIGRVGHSVVFLLPKEDTYV 367
Query: 85 AFLRNRRVPL 94
FLR R VP+
Sbjct: 368 GFLRIRNVPV 377
>gi|255559531|ref|XP_002520785.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223539916|gb|EEF41494.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 592
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 40/70 (57%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
+LL TDVAARGLD P V I+Q DPPQ+P VF+H P E+AY
Sbjct: 335 ILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGRQGSAIVFLLPKEEAYV 394
Query: 85 AFLRNRRVPL 94
FLR RRVPL
Sbjct: 395 EFLRIRRVPL 404
>gi|302787567|ref|XP_002975553.1| hypothetical protein SELMODRAFT_103968 [Selaginella moellendorffii]
gi|300156554|gb|EFJ23182.1| hypothetical protein SELMODRAFT_103968 [Selaginella moellendorffii]
Length = 542
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 37/70 (52%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VL TDVAARGLD P V WI+Q DPPQ+P FVH P ED Y
Sbjct: 310 VLFCTDVAARGLDIPGVDWIVQYDPPQDPNTFVHRVGRTARIGRVGHSVVFLLPKEDTYV 369
Query: 85 AFLRNRRVPL 94
FLR R VP+
Sbjct: 370 EFLRIRNVPV 379
>gi|300122648|emb|CBK23215.2| unnamed protein product [Blastocystis hominis]
Length = 624
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 38/70 (54%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VL TDVAARG+D PDV WIIQ DPPQ+P FVH E+AY
Sbjct: 314 VLFCTDVAARGIDIPDVDWIIQFDPPQDPAFFVHRVGRTARAGKKGQSLLFLESTEEAYV 373
Query: 85 AFLRNRRVPL 94
+F R R VPL
Sbjct: 374 SFTRRRGVPL 383
>gi|15217442|ref|NP_177293.1| DEAD-box ATP-dependent RNA helicase 49 [Arabidopsis thaliana]
gi|108861897|sp|Q8GXD6.2|RH49_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 49
gi|12323724|gb|AAG51820.1|AC016163_9 putative ATP-dependent RNA helicase; 76692-78838 [Arabidopsis
thaliana]
gi|332197073|gb|AEE35194.1| DEAD-box ATP-dependent RNA helicase 49 [Arabidopsis thaliana]
Length = 558
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 40/70 (57%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VLL TDVAARGLD P + +++Q DPPQ+P+VF+H P E Y
Sbjct: 322 VLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKETDYV 381
Query: 85 AFLRNRRVPL 94
F+R RRVPL
Sbjct: 382 EFMRIRRVPL 391
>gi|26451630|dbj|BAC42912.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 558
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 40/70 (57%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VLL TDVAARGLD P + +++Q DPPQ+P+VF+H P E Y
Sbjct: 322 VLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKETDYV 381
Query: 85 AFLRNRRVPL 94
F+R RRVPL
Sbjct: 382 EFMRIRRVPL 391
>gi|298714126|emb|CBJ27307.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 657
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 36/64 (56%)
Query: 31 VAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYEAFLRNR 90
VAARG+D PDV WI+Q DPPQ+P FVH P EDAY FL NR
Sbjct: 286 VAARGIDIPDVAWIVQFDPPQDPSYFVHRVGRTARAGKKGRSLTLLCPAEDAYIPFLANR 345
Query: 91 RVPL 94
+VPL
Sbjct: 346 KVPL 349
>gi|328772701|gb|EGF82739.1| hypothetical protein BATDEDRAFT_1910 [Batrachochytrium
dendrobatidis JAM81]
Length = 490
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VL+ TD+AARGLD PDV W++Q D PQ+P+ F H HEDAY
Sbjct: 306 VLICTDIAARGLDIPDVDWVVQFDAPQDPKAFAHRCGRAARFGRQGSAVVFLSQHEDAYV 365
Query: 85 AFLRNRRVPL 94
FL+ R+VP+
Sbjct: 366 EFLQLRKVPI 375
>gi|303280952|ref|XP_003059768.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458423|gb|EEH55720.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 535
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 3 RNAALSRFCGXXXXXXXXXGALVLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXX 62
R AALS F GA LL TDVAARGLD P V W+IQ D PQ+P FVH
Sbjct: 346 REAALSAFAATTT------GA-CLLCTDVAARGLDIPGVDWVIQFDAPQDPAAFVHRVGR 398
Query: 63 XXXXXXXXXXXXXXXPHEDAYEAFLRNRRV 92
PHE++Y FLR R +
Sbjct: 399 TARMGREGSSLLYVSPHEESYLEFLRVRHI 428
>gi|301118004|ref|XP_002906730.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262108079|gb|EEY66131.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 661
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 39/69 (56%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
+L+ TDV ARG+D PDV WI+Q DPPQ+P FVH +EDAY
Sbjct: 323 LLVCTDVVARGIDLPDVDWIVQYDPPQDPNFFVHRVGRTARAGRSGCALSFLSSNEDAYV 382
Query: 85 AFLRNRRVP 93
FL+ R+VP
Sbjct: 383 NFLKIRKVP 391
>gi|66802950|ref|XP_635318.1| hypothetical protein DDB_G0291588 [Dictyostelium discoideum AX4]
gi|74896812|sp|Q54EC2.1|DDX55_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx55; AltName:
Full=DEAD box protein 55
gi|60463593|gb|EAL61778.1| hypothetical protein DDB_G0291588 [Dictyostelium discoideum AX4]
Length = 663
Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 26 LLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYEA 85
LL+TD+AARGLD P+V W++Q D PQ+P+ FVH P ED+Y
Sbjct: 369 LLSTDLAARGLDIPNVDWVLQYDSPQDPKAFVHRIGRTARMGRDGNALIFLSPEEDSYIE 428
Query: 86 FLRNRRVPL 94
FL+ ++VPL
Sbjct: 429 FLKIKKVPL 437
>gi|242051997|ref|XP_002455144.1| hypothetical protein SORBIDRAFT_03g005040 [Sorghum bicolor]
gi|241927119|gb|EES00264.1| hypothetical protein SORBIDRAFT_03g005040 [Sorghum bicolor]
Length = 644
Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VL+ TDVAARGLD P V I+Q DPPQ+P VF+H P ED Y
Sbjct: 340 VLVCTDVAARGLDIPSVDLIVQYDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPKEDTYV 399
Query: 85 AFLRNRRVPL----CP 96
FL+ R VPL CP
Sbjct: 400 EFLKLRGVPLTERECP 415
>gi|255087136|ref|XP_002505491.1| predicted protein [Micromonas sp. RCC299]
gi|226520761|gb|ACO66749.1| predicted protein [Micromonas sp. RCC299]
Length = 529
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 1 STRNAALSRFCGXXXXXXXXXGALVLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXX 60
S R AL RF LL TDVAARGLD P V W++Q D PQ+P FVH
Sbjct: 317 SQREQALGRFAAGAGG--------CLLCTDVAARGLDIPGVDWVVQFDAPQDPAAFVHRV 368
Query: 61 XXXXXXXXXXXXXXXXXPHEDAYEAFLRNRRVPL 94
PHE +Y FLR R + L
Sbjct: 369 GRTARMGRDGSALLFLSPHESSYVEFLRVRHIHL 402
>gi|226499134|ref|NP_001147316.1| ATP-dependent rRNA helicase spb4 [Zea mays]
gi|195609842|gb|ACG26751.1| ATP-dependent rRNA helicase spb4 [Zea mays]
Length = 641
Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VL+ TDVAARGLD P V I+Q DPPQ+P VF+H P ED Y
Sbjct: 337 VLVCTDVAARGLDIPSVDLIVQYDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPKEDTYV 396
Query: 85 AFLRNRRVPL----CP 96
FL+ R VPL CP
Sbjct: 397 EFLKLRGVPLTERECP 412
>gi|325179717|emb|CCA14120.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 693
Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 37/69 (53%)
Query: 25 VLLATDVAARGLDFPDVKWIIQMDPPQNPEVFVHXXXXXXXXXXXXXXXXXXXPHEDAYE 84
VL+ TDV ARG+D PDV WI+Q DPPQ+P FVH ED Y
Sbjct: 349 VLICTDVVARGIDLPDVDWILQYDPPQDPNFFVHRIGRTARAGRTGNALSFISQKEDVYI 408
Query: 85 AFLRNRRVP 93
+LR R+VP
Sbjct: 409 NYLRIRKVP 417
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.322 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 867,628,774
Number of extensions: 17487255
Number of successful extensions: 60617
Number of sequences better than 10.0: 12015
Number of HSP's gapped: 60607
Number of HSP's successfully gapped: 12017
Length of query: 162
Length of database: 5,058,227,080
Length adjustment: 123
Effective length of query: 39
Effective length of database: 3,240,566,044
Effective search space: 126382075716
Effective search space used: 126382075716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)