bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eace_0121_orf2
Length=134
Score E
Sequences producing significant alignments: (Bits) Value
4896.SPAC1805.12c 241 3e-63
> 4896.SPAC1805.12c
Length=128
Score = 241 bits (616), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/128 (91%), Positives = 124/128 (96%), Gaps = 0/128 (0%)
Query 6 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLDDGRTLSDYN 65
MQIFVKTLTGKTITL+VE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL+DGRTLSDYN
Sbjct 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query 66 IQKESTLHLVLRLRGGIIEPSLALLASKYNCEKKMCRKCYARLPPRATNCRKKKCGHTSQ 125
IQKESTLHLVLRLRGGIIEPSL LASKYNCEK++CRKCYARLPPRATNCRKKKCGHT+Q
Sbjct 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query 126 LRPKKKPK 133
LRPKKK K
Sbjct 121 LRPKKKLK 128
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 22682284714
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40