bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eace_0161_orf1
Length=199
Score E
Sequences producing significant alignments: (Bits) Value
5833.PF11_0481 94.7 1e-18
> 5833.PF11_0481
Length=2755
Score = 94.7 bits (234), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 69/107 (64%), Gaps = 9/107 (8%)
Query 90 RLKDIHNTSNSKRLLSDVFKDLKAEGVDVDKVWKSIKEITAKTFVCLQPWLELRYRHVYQ 149
R K+IH+ +N+K+LLSDVF LK G D+D +WK IK+IT T + + +++ + ++ +
Sbjct 1519 RKKNIHDKNNNKQLLSDVFIYLKKNGYDIDDIWKQIKKITCLTSLAIYSYIKEKIKYNF- 1577
Query 150 GEQQQQQQQQRSRCFQFLGLDILLDADDKCWLLEVNSSPSLRVDYFD 196
+Q +GLDILLD + K WLLEVNS+PSLR+DY D
Sbjct 1578 --------HNNFYFYQLIGLDILLDNNGKAWLLEVNSNPSLRIDYID 1616
Lambda K H
0.322 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 47162034073
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40