bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0164_orf1 Length=148 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF1315w 78.6 5e-14 > 5833.PFF1315w Length=1712 Score = 78.6 bits (192), Expect = 5e-14, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 86/145 (59%), Gaps = 7/145 (4%) Query 3 QQQPHLQVVENAQGEKACEGKWILATQTQVLDCNKAEKTEGETPLLVCIRLRNDKIAKTI 62 Q H+ +EN + K + + +D N + GE PL++CIR RN+ +A I Sbjct 1527 QNALHIACLENQE-------KIVHYLLSHNIDINCKDNINGECPLMICIRTRNENLALLI 1579 Query 63 LKKAKSIDLEAKDSQGRTALLAALFFGQYSVAATLMEMGADVMTQDEAGNTALAIANERL 122 L + K+I+ + G T+L+ ++F+G Y VA LM+ GADV +D G+ + +A ER+ Sbjct 1580 LNEGKNINYNLTNIHGETSLIYSIFYGLYDVADILMKRGADVSVRDINGDKSYNVACERV 1639 Query 123 LTPGSDKRVLRRFLRLYRSRDTSII 147 L+ + K+VL++FL+LYRS++ + + Sbjct 1640 LSHKTCKKVLKKFLKLYRSQNKNFL 1664 Lambda K H 0.317 0.130 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22943761524 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40