bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0378_orf1 Length=344 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0346 325 2e-87 > 5833.PF14_0346 Length=853 Score = 325 bits (832), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 154/261 (59%), Positives = 198/261 (75%), Gaps = 1/261 (0%) Query 83 KPGGERKVQKAIMQQDDTQAEDARLLSHLEKREKTGTDLSLIRSSLSANLVCSSLNDSEV 142 K G ER +KAI DD ED+ + HLE REK D+ +I++SL NLVCS+LND+E+ Sbjct 8 KKGNERNKKKAIFSNDDFTGEDSLMEDHLELREKLSEDIDMIKTSLKNNLVCSTLNDNEI 67 Query 143 EALANAVQFFTFTKGDIVTKQGENGSYFFIVHSGEFEVIVNDKVVNKIVEGQAFGEISLI 202 L+N +QFF F G++V KQGE GSYFFI++SG+F+V VNDK V + +G +FGE +LI Sbjct 68 LTLSNYMQFFVFKSGNLVIKQGEKGSYFFIINSGKFDVYVNDKKVKTMGKGSSFGEAALI 127 Query 203 HNSARTASIKTLSEKAALWGVQRQVFRETLKQLSSRNFAENRQFLASVEFFQMLTEAQKN 262 HN+ R+A+I ++ LWGVQR FR TLKQLS+RNF ENR F+ SV F MLTEAQKN Sbjct 128 HNTQRSATIIAETD-GTLWGVQRSTFRATLKQLSNRNFNENRTFIDSVSVFDMLTEAQKN 186 Query 263 VITNALVVQSFRAGQPIVKEGEKGDILYILKSGKARVSINGKDVRLLQKGDYFGERALLY 322 +ITNA V+Q+F++G+ IVK+G+ GD+LYILK GKA V IN +++R+L+KG YFGERALLY Sbjct 187 MITNACVIQNFKSGETIVKQGDYGDVLYILKEGKATVYINDEEIRVLEKGSYFGERALLY 246 Query 323 DEPRSATIIAEEETVCVSIGR 343 DEPRSATIIA+E T C SI R Sbjct 247 DEPRSATIIAKEPTACASICR 267 Lambda K H 0.311 0.126 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 127948868655 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40