bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0826_orf3 Length=272 Score E Sequences producing significant alignments: (Bits) Value 7227.CG8804-PB 134 3e-30 > 7227.CG8804-PB Length=379 Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 130/258 (50%), Gaps = 29/258 (11%) Query 1 LVRRPVVRGAFCNDRDISLPYLSQSISSLDVFWIGTALPAFIIILVELLLSAVRATQDKE 60 L+ P RG FC+D + P+ ++ + +++IG +P +I +VE+++S +A QD Sbjct 109 LLGEPYKRGFFCDDESLKHPFHDSTVRNWMLYFIGAVIPVGVIFIVEVIISQNKAKQDNG 168 Query 61 QQQQQAVVVLRRRMPETVVQIYTYCGALGLSSAFVFLVTNAIKAAVGSLRPHFLAVCLPD 120 + V + +P+ +++ Y G + L T+ K ++G LRPHF+AVC P Sbjct 169 NATSRRYVFMNYELPDWMIECYKKIGIYAFGAVLSQLTTDIAKYSIGRLRPHFIAVCQPQ 228 Query 121 WSRVRCTDSSGLHEVYVDDFFCTGKPS---LIEEARRSFPSGHTSCSSCGLVFAVLYLQY 177 + D + Y+ +F C G S +++E R SFPSGH+S + +V+ LYLQ Sbjct 229 MADGSTCDDAINAGKYIQEFTCKGVGSSARMLKEMRLSFPSGHSSFTFFAMVYLALYLQA 288 Query 178 RLVWQQGSTAPKRHLRQKQTRWGVAAEQLYWVLQAAAPLVQFVLLMLALYVPSTRVVEHF 237 R+ W +GS + LR L+QF+ +M+A Y +RV ++ Sbjct 289 RMTW-RGS----KLLRH---------------------LLQFLFIMVAWYTALSRVSDYK 322 Query 238 HRIGDVLAGMAIGVFTAL 255 H DVLAG IG +AL Sbjct 323 HHWSDVLAGSLIGSISAL 340 Lambda K H 0.330 0.140 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 87973883370 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40