bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eace_0880_orf1
Length=230
Score E
Sequences producing significant alignments: (Bits) Value
3702.AT5G18620.2 142 8e-33
> 3702.AT5G18620.2
Length=1072
Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 131/213 (61%), Gaps = 7/213 (3%)
Query 23 PLTEEEKEERKRLIAEGFRGWARRDLLAFVRGCEMYGRWDLERIATEVEGKSLDDVRRYA 82
PLT EE EE++ L+ EGF W+RRD AF+R CE YGR D++ IA+E+EGK+ ++V RYA
Sbjct 830 PLTAEEVEEKELLLEEGFSTWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYA 889
Query 83 AVFWSRLEELSDWRKLLKRIQDGEAVIQRRRELEQVIVRRQQQSDFPWRRLPVNFAAATK 142
VF R +EL+D+ +++K I+ GEA I R+ E+ + I ++ + PW L + + K
Sbjct 890 QVFQVRYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYRNPWLELKIQY-GQNK 948
Query 143 SKSFFAEEEDIFVLNLTTLLGYGNWEKLRSQILRDSTWTGDWFFRSRAPADLGRRAEAII 202
K + EE D F++ + LGYGNW++L++ + DWF +SR +L RR + +I
Sbjct 949 GK-LYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLI 1007
Query 203 RQLKKE-----EGERFSRGRRRLDMPATKQQSP 230
R ++KE E ER +R ++L AT + P
Sbjct 1008 RLIEKENQEFDERERQARKEKKLSKSATPSKRP 1040
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 64397904082
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40