bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0998_orf4 Length=278 Score E Sequences producing significant alignments: (Bits) Value 5833.PFL2215w 546 3e-154 > 5833.PFL2215w Length=376 Score = 546 bits (1407), Expect = 3e-154, Method: Compositional matrix adjust. Identities = 257/278 (92%), Positives = 272/278 (97%), Gaps = 0/278 (0%) Query 1 PEEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVAIQAVLSLYSSGRTTGIVLDSGD 60 PEEHPVLLTEAPLNPK NRERMTQIMFE+FNVPAMYVAIQAVLSLYSSGRTTGIVLDSGD Sbjct 99 PEEHPVLLTEAPLNPKGNRERMTQIMFESFNVPAMYVAIQAVLSLYSSGRTTGIVLDSGD 158 Query 61 GVSHTVPIYEGYALPHAMMRLDLAGRDLTEYMMTILHERGYGFTTTAEKEIVRDIKEKLC 120 GVSHTVPIYEGYALPHA+MRLDLAGRDLTEY+M ILHERGYGF+T+AEKEIVRDIKEKLC Sbjct 159 GVSHTVPIYEGYALPHAIMRLDLAGRDLTEYLMKILHERGYGFSTSAEKEIVRDIKEKLC 218 Query 121 YIALDFDEEMKNAEDSSDIEKSYELPDGNIITVGNERFRCPEALFQPSFLGKEASGVHRT 180 YIAL+FDEEMK +E SSDIEKSYELPDGNIITVGNERFRCPEALFQPSFLGKEA+G+H T Sbjct 219 YIALNFDEEMKTSEQSSDIEKSYELPDGNIITVGNERFRCPEALFQPSFLGKEAAGIHTT 278 Query 181 TFDSIMKCDVDIRKDLYGNVVLSGGTTMYEGIGERLTKELTSLAPSTMKIKVVAPPERKY 240 TF+SI KCDVDIRKDLYGN+VLSGGTTMYEGIGERLT+++T+LAPSTMKIKVVAPPERKY Sbjct 279 TFNSIKKCDVDIRKDLYGNIVLSGGTTMYEGIGERLTRDITTLAPSTMKIKVVAPPERKY 338 Query 241 SVWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRKCF 278 SVWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRKCF Sbjct 339 SVWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRKCF 376 Lambda K H 0.317 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 91589248440 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40