bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_1572_orf2 Length=126 Score E Sequences producing significant alignments: (Bits) Value 3702.AT5G52640.1 61.2 7e-09 > 3702.AT5G52640.1 Length=705 Score = 61.2 bits (147), Expect = 7e-09, Method: Composition-based stats. Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 5/104 (4%) Query 9 MRGQKVFEINPSHRIMQQLLQRVR-DGGEDSMKDEDTQLAERLFDAAMLASGFDVEQPAQ 67 M +K EINP + IM++L +R D + S+KD L L++ A+L SGF +++P Sbjct 606 MSSKKTMEINPDNGIMEELRKRAEADKNDKSVKD----LVMLLYETALLTSGFSLDEPNT 661 Query 68 LAAVLYKGLASQVGVDPADPINENIDLPEEEADKTEENAEEPMD 111 AA +++ L + +D + + E+ D+PE E D EE+ E +D Sbjct 662 FAARIHRMLKLGLSIDEDENVEEDGDMPELEEDAAEESKMEEVD 705 Lambda K H 0.313 0.133 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22588795449 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40