bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_1929_orf2 Length=171 Score E Sequences producing significant alignments: (Bits) Value 5671.LinJ32.1290 90.1 2e-17 > 5671.LinJ32.1290 Length=402 Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 58/80 (72%), Gaps = 1/80 (1%) Query 92 SRSTNLFLSSKRLLQFIGTPKKPKKGDRIVYVDGSFDVLHVGHVRILKIAKQMGDYLIVG 151 S + + +S++++QF PK GDRIVYVDGSFD+ H+GH+R+L+ A+++GDY+I G Sbjct 206 SPTMHCLTTSRKIVQF-SNNSSPKSGDRIVYVDGSFDLFHIGHIRVLQKARELGDYVIAG 264 Query 152 IHDDATVAAVKGPGFPVLNL 171 +++D V KG +P++NL Sbjct 265 VYEDQVVNEHKGKNYPIMNL 284 Lambda K H 0.310 0.121 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 32237076404 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40