bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eace_3360_orf1
Length=152
Score E
Sequences producing significant alignments: (Bits) Value
5807.cgd4_320 264 5e-70
> 5807.cgd4_320
Length=220
Score = 264 bits (675), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 128/146 (87%), Positives = 137/146 (93%), Gaps = 1/146 (0%)
Query 7 MSGKDDYYDYLYKIVLIGDSGVGKSNMLSRFTRDEFNLESKSTIGVEFATKSVYLDEGKV 66
MS KD++YDYLYKIVLIGDSGVGKSN+LSRFTRDEFNLESKSTIGVEFATKS+ + EGKV
Sbjct 1 MSSKDEHYDYLYKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSI-ITEGKV 59
Query 67 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRQSFENVERWLKELRDHADPNIVI 126
IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKR SFENVERWLKELRDHADPNIV+
Sbjct 60 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRSSFENVERWLKELRDHADPNIVV 119
Query 127 LLVGNKSDLRHLRAVSPEEATRFANR 152
LLVGNKSDLR+LR V+ EEA F+ R
Sbjct 120 LLVGNKSDLRNLRTVTQEEACAFSER 145
Lambda K H
0.318 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 22586169780
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40