bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_0001_orf1
Length=262
Score E
Sequences producing significant alignments: (Bits) Value
CE05905 35.4 0.13
Hs22059237 34.3 0.28
At4g31470 32.3 1.0
YHR150w 31.6 1.8
Hs22059233 31.2 2.2
CE12290 31.2 2.2
CE05901 30.8 3.4
CE23800 30.4 3.4
> CE05905
Length=207
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 0/48 (0%)
Query 159 LLWSQSTKIACAVGVCTDESPLPSGKEAILVCQFSPAAQENAAPFSKE 206
+ W+ ++ I C V C ++ + + + +VCQ+SP P KE
Sbjct 139 MAWANTSSIGCGVKNCGRDASMRNMNKIAVVCQYSPPGNTMGRPIYKE 186
> Hs22059237
Length=344
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query 149 ANADGANLANLLWSQSTKIACAVGVCTDESPLPSGKEAILVCQFSPAAQENAAPFS 204
+ D +N L+W S K+ CAV C+ + AI +C ++P P+
Sbjct 151 CSGDCSNYIQLVWDHSYKVGCAVTPCSKIGHIIHA--AIFICNYAPGGTLTRRPYE 204
> At4g31470
Length=185
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query 149 ANADGANLANLLWSQSTKIACAVGVCTDESPLPSGKEAILVCQFSPAAQENAAP 202
AN D + L+W +S++I CA+ C + ++C + P P
Sbjct 137 ANGDCLHYTQLVWKKSSRIGCAISFCKTG-------DTFIICNYDPPGNIVGQP 183
> YHR150w
Length=579
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Query 203 FSKEYYDVLHARNTPITEMTEADLKESSTGGAAAAVPSLL 242
FSK + D L +RN I E++E D + +TG + L+
Sbjct 315 FSKSFMDTLESRNQEIDEISELDKRTENTGELKQGMKVLI 354
> Hs22059233
Length=233
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query 159 LLWSQSTKIACAVGVCTDESPLPSGKEAILVCQFSPAAQ-ENAAPFSK 205
L+W+ S + CAV +C + L AI VC + PA N P+ +
Sbjct 141 LVWANSFYVGCAVAMCPN---LGGASTAIFVCNYGPAGNFANMPPYVR 185
> CE12290
Length=544
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 0/51 (0%)
Query 206 EYYDVLHARNTPITEMTEADLKESSTGGAAAAVPSLLFASLITTLAAVAYR 256
E D++ A + + E+T+ D+ GAA + SL+ S+ITTL A R
Sbjct 135 ENTDIVCATLSLLRELTDDDVMNEGEDGAAELIESLVSGSIITTLLACVER 185
> CE05901
Length=212
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query 159 LLWSQSTKIACAVGVCTDESPLPSGKEAILVCQFSPAAQ 197
+ W+ + KI C + C+ +S G + ++VC +SPA
Sbjct 147 MAWATTNKIGCGISKCSSDS---FGTQYVVVCLYSPAGN 182
> CE23800
Length=208
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 0/38 (0%)
Query 159 LLWSQSTKIACAVGVCTDESPLPSGKEAILVCQFSPAA 196
+ W+++ KI C V C +S + + + +VCQ+ A
Sbjct 140 MAWAETNKIGCGVKNCGKDSSMNNMYKVAVVCQYDQAG 177
Lambda K H
0.316 0.127 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 5542830696
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40