bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eace_0887_orf4 Length=190 Score E Sequences producing significant alignments: (Bits) Value SPBC543.09 55.1 8e-08 Hs5802970 48.9 6e-06 YMR089c 47.0 3e-05 7294008 38.9 0.006 At2g29080 37.4 0.017 YER017c 32.7 0.41 CE02963 29.6 4.2 > SPBC543.09 Length=773 Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 14/72 (19%) Query 1 RQSPQDPYQLFSDATAQLVDDEVRNLISNQYERVKALLKEKE-----------KKETLTF 49 R++ Q P FS+ATAQ++D+E+R L+ + YER K LL E + +KE +T+ Sbjct 669 RETVQKP---FSEATAQMIDEEIRKLVKHAYERTKKLLLEHKQGLENIAQRLLQKEVITY 725 Query 50 ADLQDCLGTRPF 61 +++ LG RP+ Sbjct 726 NEVETILGPRPY 737 > Hs5802970 Length=797 Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 11/62 (17%) Query 11 FSDATAQLVDDEVRNLISNQYERVKALLKEKE-----------KKETLTFADLQDCLGTR 59 +S+ATA+L+DDEVR LI++ Y+R ALL EK+ +KE L D+ + LG R Sbjct 689 YSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELLGPR 748 Query 60 PF 61 PF Sbjct 749 PF 750 > YMR089c Length=825 Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 11/63 (17%) Query 11 FSDATAQLVDDEVRNLISNQYERVKALLKEKE-----------KKETLTFADLQDCLGTR 59 FSD T ++D EV ++ ++R LLKEK KKE LT D+ D LG R Sbjct 727 FSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDMIDLLGKR 786 Query 60 PFP 62 PFP Sbjct 787 PFP 789 > 7294008 Length=793 Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 11/62 (17%) Query 11 FSDATAQLVDDEVRNLISNQYERVKALL-KEKE----------KKETLTFADLQDCLGTR 59 +S+ TAQL+D+EVR++I +E +LL K KE + E L+ D+ + LG R Sbjct 674 YSEDTAQLIDNEVRSIIKCAHEATTSLLTKHKENVQKVAERLLQNEVLSRDDMIELLGPR 733 Query 60 PF 61 PF Sbjct 734 PF 735 > At2g29080 Length=807 Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 11/62 (17%) Query 11 FSDATAQLVDDEVRNLISNQYERVKALLKEKE-----------KKETLTFADLQDCLGTR 59 +S+ T ++D+EVR+ ++ YER L++E + +KE L DL LG R Sbjct 699 YSNKTGAIIDEEVRDWVAKAYERTVELVEEHKVKVAEIAELLLEKEVLHQDDLLKILGER 758 Query 60 PF 61 PF Sbjct 759 PF 760 > YER017c Length=761 Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 11/62 (17%) Query 11 FSDATAQLVDDEVRNLISNQYERVKALL-----------KEKEKKETLTFADLQDCLGTR 59 FS+ TA+ +D EV++++ + + LL KE +KE +T D+ LG R Sbjct 673 FSNKTARTIDLEVKSIVDDAHRACTELLTKNLDKVDLVAKELLRKEAITREDMIRLLGPR 732 Query 60 PF 61 PF Sbjct 733 PF 734 > CE02963 Length=1225 Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 10/97 (10%) Query 98 IPT--AISGDRNVRDEKGSTSDKDAAADGHSMQQRKQSIKDTEGSNGDDKEPTDAGKNGG 155 IPT IS D + E ++K Q K++ + + G +E ++ + Sbjct 511 IPTQRTISCDDDGYSESTRNNNKAPQVFSPDKQDAKKNCQVISENFGKSEEQSEGDETSN 570 Query 156 KGKKKRNGKGNAADDDDDDNDDD------DDDRNGNN 186 KG K N GN DD D +N D DD+ NG N Sbjct 571 KGSKDEN--GNMLDDVDQENTSDNEISFPDDEANGRN 605 Lambda K H 0.305 0.128 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 3166472848 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40