bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_1009_orf2
Length=134
Score E
Sequences producing significant alignments: (Bits) Value
CE27006_1 39.7 0.002
At1g67820 30.8 0.84
7297303 30.0 1.1
YBL056w 29.3 2.0
Hs22043217 29.3 2.3
At1g07160 28.9 2.9
At2g40180 28.1 5.4
Hs18375634 26.9 9.9
> CE27006_1
Length=772
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query 76 EPMA--PTNYG-TFQVSVDTDIGGRKHQEDRFTVCPALIA-GRDDAAFFGVFDGTVGDFA 131
EPMA P +G +++V GGR++ EDR + I G D F GVFDG G+ A
Sbjct 6 EPMARTPIQFGENMRITVAASQGGRRYMEDRCVIHTERINNGLLDWTFVGVFDGHGGEHA 65
Query 132 SE 133
SE
Sbjct 66 SE 67
> At1g67820
Length=464
Score = 30.8 bits (68), Expect = 0.84, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query 95 GGRKHQEDRFTVCPALIAGRDDAAFFGVFDGTVGDFASE 133
G +K ED + P L+ G +FFGV+DG G A+E
Sbjct 128 GKKKFMEDTHRIVPCLV-GNSKKSFFGVYDGHGGAKAAE 165
> 7297303
Length=524
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query 87 QVSVDTDIGGRKHQEDRFTVCPALIAGRDDAAFFGVFDGTVGDFASE 133
Q S +G R EDRF + I +FF VFDG G+FA++
Sbjct 110 QSSAFAVLGRRPRMEDRFII-EENINNNTGISFFAVFDGHGGEFAAD 155
> YBL056w
Length=468
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query 95 GGRKHQEDRFTVCPALIAGRDDA--AFFGVFDGTVGDFASE 133
G R ED V P L+A D+ AF+G+FDG G +E
Sbjct 31 GWRMSMEDAHIVEPNLLAESDEEHLAFYGIFDGHGGSSVAE 71
> Hs22043217
Length=208
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query 87 QVSVDTDIGGRKHQEDRFTVCPALIAGRDDAAFFGVFD 124
V+V + G R H EDRF V L A + + FG+FD
Sbjct 77 NVAVYSIQGRRDHMEDRFEVLTDL-ANKTHPSIFGIFD 113
> At1g07160
Length=380
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query 89 SVDTDIGGRKHQEDRFTVCPALIAGRDDAAFFGVFDGTVGDFASE 133
SV G R+ EDRF+ L G A FGV+DG G A+E
Sbjct 124 SVYCKRGKREAMEDRFSAITNL-QGDPKQAIFGVYDGHGGPTAAE 167
> At2g40180
Length=390
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query 89 SVDTDIGGRKHQEDRFTVCPALIAGRDDA----AFFGVFDGTVGDFASE 133
SV G R EDR+ A + DD AFFGVFDG G A+E
Sbjct 130 SVYCKRGRRGPMEDRYF---AAVDRNDDGGYKNAFFGVFDGHGGSKAAE 175
> Hs18375634
Length=1132
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query 9 PAWSPAVQQLHQQQLALTPSSSTSSSSSSSDSSSRRRCSLYTA--MAHSPAAGDAAAAAA 66
P W P +QQ Q Q + P S + S + RR+ + S A AA AA
Sbjct 1016 PEWVPIIQQDIQSQRKVKPQPPLSDAYLSGMPAKRRKTMQGEGPQLLLSEAVSRAAKAAG 1075
Query 67 AAEL--PRTLHEPM-APTNYGTFQVSVDTDIGGRKHQEDRFT 105
A L P +L + AP +++ + +DI R ++ ++
Sbjct 1076 ARPLTSPESLSRDLEAPEVQESYRQQLRSDIQKRLQEDPNYS 1117
Lambda K H
0.314 0.124 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1393086308
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40