bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_1078_orf1
Length=133
Score E
Sequences producing significant alignments: (Bits) Value
At5g36790 48.9 3e-06
At5g47760 48.1 4e-06
7292293 45.4 3e-05
CE17072 43.9 8e-05
CE16942 43.9 8e-05
CE12060 43.5 1e-04
7293934 41.6 4e-04
YDL236w 41.2 5e-04
> At5g36790
Length=362
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 0/69 (0%)
Query 57 RVYVVGEKGLLEELRSNGIDAFGGPEEAYEAIDFARDPAVYVQPEVNYVVVGLDRDFYYK 116
+VYV+GE+G+L+EL G GGP++ I+ + +V VVVG DR F Y
Sbjct 165 KVYVIGEEGILKELELAGFQYLGGPDDGKRQIELKPGFLMEHDHDVGAVVVGFDRYFNYY 224
Query 117 KLQTAQLYI 125
K+Q L I
Sbjct 225 KIQYGTLCI 233
> At5g47760
Length=301
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 0/69 (0%)
Query 57 RVYVVGEKGLLEELRSNGIDAFGGPEEAYEAIDFARDPAVYVQPEVNYVVVGLDRDFYYK 116
+VYV+G +G+LEEL+ G GGPE+ + + + V VVVGLD + Y
Sbjct 105 KVYVIGGEGVLEELQIAGFTGLGGPEDGEKKAQWKSNSLFEHDKSVGAVVVGLDPNINYY 164
Query 117 KLQTAQLYI 125
KLQ L +
Sbjct 165 KLQYGTLCV 173
> 7292293
Length=592
Score = 45.4 bits (106), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query 59 YVVGEKGLLEELRSNGIDAFGGPEEAYEAIDFARD-PAVYVQPEVNYVVVGLDRDFYYKK 117
YVVG +G+++EL+ GI++ + + ++Y+ P V VVVG D+DF K
Sbjct 117 YVVGGQGIVDELKLVGIESLPLDHSSLQGFSMPDHIHSIYLDPNVGAVVVGSDKDFNTIK 176
Query 118 LQTAQLYINDMHAKFI 133
L A Y+ D F+
Sbjct 177 LTKACCYLRDSEVMFV 192
Score = 31.6 bits (70), Expect = 0.38, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query 52 QQHKSRVYVVGEKGLLEELRSNGIDAFGGPEEAYEAI-DFARDPAVYVQPEVNYVVVGLD 110
+ + +V+V+GEKG+ EL GI + E+ + + +F + + + P+V V+VG D
Sbjct 388 KNFQKKVFVMGEKGVHFELEKFGICSLKMSEKLEKPMHEFVTE--LELDPDVGAVIVGRD 445
Query 111 RDFYYKKLQTAQLYI 125
F KL Y+
Sbjct 446 EGFNMAKLVRTGSYL 460
> CE17072
Length=335
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query 45 SSSIQQQQQHKSRVYVVGEKGLLEELRSNGIDAFG-GPEEAYEAID----FARDPAVYVQ 99
+ ++ + RVY++GE+GL +E+ GI+ FG GPE+ + D F D + ++
Sbjct 122 ADTLHRAGLDGKRVYLIGEQGLRDEMDELGIEYFGHGPEKKQDEADGSGAFMYD--IKLE 179
Query 100 PEVNYVVVGLDRDFYYKKLQTAQLYINDMHAKFI 133
V VVVG ++ F Y K+ A Y+ + F+
Sbjct 180 ENVGAVVVGYEKHFDYIKMMKASNYLREEGVLFV 213
> CE16942
Length=349
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query 45 SSSIQQQQQHKSRVYVVGEKGLLEELRSNGIDAFG-GPEEAYEAID----FARDPAVYVQ 99
+ ++ + RVY++GE+GL +E+ GI+ FG GPE+ + D F D + ++
Sbjct 132 ADTLHRAGLDGKRVYLIGEQGLRDEMDELGIEYFGHGPEKKQDEADGSGAFMYD--IKLE 189
Query 100 PEVNYVVVGLDRDFYYKKLQTAQLYINDMHAKFI 133
V VVVG ++ F Y K+ A Y+ + F+
Sbjct 190 ENVGAVVVGYEKHFDYVKMMKASNYLREEGVLFV 223
> CE12060
Length=322
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query 45 SSSIQQQQQHKSRVYVVGEKGLLEELRSNGIDAFG-GPEEAYEAID----FARDPAVYVQ 99
+ ++ + RVY++GE+GL +E+ GI+ FG GPE+ + D F D + ++
Sbjct 105 ADTLHRAGLDGKRVYLIGEQGLRDEMDELGIEYFGHGPEKKQDEADGSGAFMYD--IKLE 162
Query 100 PEVNYVVVGLDRDFYYKKLQTAQLYINDMHAKFI 133
V VVVG ++ F Y K+ A Y+ + F+
Sbjct 163 ENVGAVVVGYEKHFDYVKMMKASNYLREEGVLFV 196
> 7293934
Length=330
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query 45 SSSIQQQQQHKSRVYVVGEKGLLEELRSNGI-DAFGGPEEAYEAIDFARDPAVYVQPEVN 103
+++ +++ RV+V+G +G+ +EL + GI GPE ++ + + ++
Sbjct 111 TAAYLKRRNFSKRVFVIGSEGITKELDAVGIQHTEVGPEPMKGSLAEFMAQHLKLDTDIG 170
Query 104 YVVVGLDRDFYYKKLQTAQLYINDMHAKFI 133
VVVG D F + K+ A Y+ND F+
Sbjct 171 AVVVGFDEHFSFPKMMKAASYLNDPECLFV 200
> YDL236w
Length=312
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query 52 QQHKSRVYVVGEKGLLEELRSNGIDAFGGPEEAYEA-IDFARDPAVY--VQPEVNYVVVG 108
Q K +V+V GE G+ EEL+ G ++ GG + + D A+ P + + +V+ V+ G
Sbjct 107 QPGKDKVWVFGESGIGEELKLMGYESLGGADSRLDTPFDAAKSPFLVNGLDKDVSCVIAG 166
Query 109 LDRDFYYKKLQTAQLYINDMHAKFI 133
LD Y +L Y+ F+
Sbjct 167 LDTKVNYHRLAVTLQYLQKDSVHFV 191
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1356426142
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40