bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_1193_orf2
Length=121
Score E
Sequences producing significant alignments: (Bits) Value
Hs8923930 39.7 0.001
At5g51720 38.1 0.004
Hs22044166 37.4 0.006
CE03767_1 34.7 0.049
7301766 34.3 0.062
Hs17435381 30.0 1.2
Hs4758908 27.3 8.0
> Hs8923930
Length=108
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query 40 CRCWQSTKFPICDNPH-KVLQKQGCNCGPAMLE 71
CRCW+S KFP CD H K ++ G N GP +++
Sbjct 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIK 104
> At5g51720
Length=108
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query 40 CRCWQSTKFPICDNPH-KVLQKQGCNCGPAMLE 71
CRCW+S FP+CD H K + G N GP +L+
Sbjct 74 CRCWRSGTFPLCDGSHVKHNKANGDNVGPLLLK 106
> Hs22044166
Length=547
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query 14 MNVFNLPSVHQEIIYPTHKRTLNFSVCRCWQSTKFPICDNPH-KVLQKQGCNCGPAMLEV 72
++ F++ + + +Y C CW+ KFP CD H K ++ G N GP ++E
Sbjct 496 VHAFDMEDLEDKAVY-----------CHCWRYKKFPFCDGSHTKHNEQTGDNVGPLIIEK 544
Query 73 R 73
+
Sbjct 545 K 545
> CE03767_1
Length=148
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query 38 SVCRCWQSTKFPICDNPHKVLQKQ-GCNCGPAMLE 71
+ CRCW+S K+P CD H K+ G N GP +++
Sbjct 96 AFCRCWKSEKWPYCDGSHGKHNKETGDNVGPLIVK 130
> 7301766
Length=133
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query 38 SVCRCWQSTKFPICDNPHKVLQKQ-GCNCGPAMLE 71
+ CRCW++ +P CD H KQ G N GP +++
Sbjct 98 AFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIK 132
> Hs17435381
Length=141
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 11/13 (84%), Gaps = 0/13 (0%)
Query 40 CRCWQSTKFPICD 52
C CW+S KFP+CD
Sbjct 99 CHCWRSRKFPLCD 111
> Hs4758908
Length=621
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query 58 LQKQGCNCGPAM-LEVRHAPSVTEPREFRSTSESSKDKLSTGSLFGGAASVAAAVA-AGG 115
L K GC+ PA+ +++R PR S+ S K S SL GG++ V +A AG
Sbjct 44 LLKSGCS--PAVQIKIRELYRRRYPRTLEGLSDLSTIKSSVFSLDGGSSPVEPDLAVAGI 101
Query 116 HAL 118
H+L
Sbjct 102 HSL 104
Lambda K H
0.320 0.133 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1198419392
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40