bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_1326_orf2
Length=60
Score E
Sequences producing significant alignments: (Bits) Value
At1g72960 53.9 7e-08
At5g45160 52.8 2e-07
At3g13870 52.0 2e-07
SPAC222.14c 45.1 3e-05
YOR165w 44.3 6e-05
7301678 30.0 1.2
> At1g72960
Length=748
Score = 53.9 bits (128), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 0/51 (0%)
Query 7 LERPVLILDVEGLDSRERGERRQTYENFLALFALALADCLLVNISCSALGR 57
+E L++D+EG D RERGE +E ALFALA++D +L+N+ C +GR
Sbjct 44 IEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAISDIVLINMWCHDIGR 94
> At5g45160
Length=834
Score = 52.8 bits (125), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 0/51 (0%)
Query 7 LERPVLILDVEGLDSRERGERRQTYENFLALFALALADCLLVNISCSALGR 57
+E + +D+EG D RERGE T+E ALFA+A+AD +L+N+ C +GR
Sbjct 89 IEPFTIAMDLEGTDGRERGEDDTTFEKQSALFAIAVADIVLINMWCHDIGR 139
> At3g13870
Length=802
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 0/51 (0%)
Query 7 LERPVLILDVEGLDSRERGERRQTYENFLALFALALADCLLVNISCSALGR 57
+E +++D+EG D RERGE +E ALFALA++D +L+N+ C +GR
Sbjct 86 IEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGR 136
> SPAC222.14c
Length=762
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query 10 PVLILDVEGLDSRERGERRQTYENFLALFALALADCLLVNISCSALGRLSG 60
P+L++DVEG D RERGE Q +E ALF+++ ++ ++VN+ + +G G
Sbjct 88 PILVMDVEGTDGRERGE-DQDFERKSALFSISTSEVIIVNMWENQVGLYQG 137
> YOR165w
Length=776
Score = 44.3 bits (103), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query 8 ERP-VLILDVEGLDSRERGERRQTYENFLALFALALADCLLVNISCSALGRLSG 60
+RP + +LDVEG D ERGE Q +E ALFA+A+++ L+VN+ +G G
Sbjct 95 DRPDIFVLDVEGSDGSERGE-DQDFERKAALFAIAVSEVLIVNMWEQQIGLYQG 147
> 7301678
Length=4820
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 0/43 (0%)
Query 2 SGGLPLERPVLILDVEGLDSRERGERRQTYENFLALFALALAD 44
S G LER V ++D G ER RR+ N LF +A+ D
Sbjct 1800 SVGAELERGVRLMDPYGQKIAERESRREELANAERLFDMAMVD 1842
Lambda K H
0.323 0.143 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1181901402
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40