bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eace_1791_orf1 Length=158 Score E Sequences producing significant alignments: (Bits) Value CE01070 48.1 7e-06 Hs7656959 41.2 8e-04 At1g55350 32.3 0.41 > CE01070 Length=805 Score = 48.1 bits (113), Expect = 7e-06, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 16/73 (21%) Query 86 LSLSEKQQQKFYAWRRISDALQQQQQQQQQEQQQEPVQPEVLFDLPCSRSIRQGFVGDCS 145 +SL++KQ+ K W+R+S+ + P ++F + C +I+Q + DCS Sbjct 253 ISLTQKQRMKLKCWKRVSELFEN---------------PTIIFSIDC-HTIKQTVISDCS 296 Query 146 FLASLAVLADYER 158 F++SL++ A YE+ Sbjct 297 FISSLSIAALYEK 309 > Hs7656959 Length=813 Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 16/73 (21%) Query 86 LSLSEKQQQKFYAWRRISDALQQQQQQQQQEQQQEPVQPEVLFDLPCSRSIRQGFVGDCS 145 L LS KQ+ F W R D P +++ + S SI+Q V DCS Sbjct 248 LPLSPKQKTTFSKWVRPEDLTNN---------------PTMIYTVS-SFSIKQTIVSDCS 291 Query 146 FLASLAVLADYER 158 F+ASLA+ A YER Sbjct 292 FVASLAISAAYER 304 > At1g55350 Length=2143 Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 14/89 (15%) Query 3 ITGGETEETLIKQRQ---NPTWDFVWFQLQRGLSEGRCVACLGTSEVFDAAPSGLDFPEG 59 +TGG EE ++ Q + +W QL R EG + +PSG D Sbjct 1888 LTGGAGEEIDLRSAQAQIDLASGRLWSQLLRFKQEGFLLGA--------GSPSGSDVHVS 1939 Query 60 VSVSTGIVARHAYSVLRHAEVLGFRFLSL 88 S+GIV HAYSVL+ EV G R + + Sbjct 1940 ---SSGIVQGHAYSVLQVREVDGHRLVQI 1965 Lambda K H 0.321 0.134 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2100092188 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40