bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_1937_orf1
Length=51
Score E
Sequences producing significant alignments: (Bits) Value
Hs4503499 53.1 1e-07
Hs4758254 53.1 1e-07
7300367 52.4 2e-07
SPBC25H2.07 50.8 5e-07
At2g04520 47.8 4e-06
At5g35680 47.8 5e-06
CE17962 45.1 3e-05
CE21225 28.5 3.0
CE15592 27.7 6.0
Hs19913408 26.9 8.0
> Hs4503499
Length=144
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 27/29 (93%), Gaps = 0/29 (0%)
Query 23 MPKNKGKGGKNRRRGKNDNEGEKRELQFK 51
MPKNKGKGGKNRRRGKN+NE EKREL FK
Sbjct 1 MPKNKGKGGKNRRRGKNENESEKRELVFK 29
> Hs4758254
Length=144
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 27/29 (93%), Gaps = 0/29 (0%)
Query 23 MPKNKGKGGKNRRRGKNDNEGEKRELQFK 51
MPKNKGKGGKNRRRGKN+NE EKREL FK
Sbjct 1 MPKNKGKGGKNRRRGKNENESEKRELVFK 29
> 7300367
Length=148
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 27/29 (93%), Gaps = 0/29 (0%)
Query 23 MPKNKGKGGKNRRRGKNDNEGEKRELQFK 51
MPKNKGKGGKNRRRGKN+NE EKREL FK
Sbjct 1 MPKNKGKGGKNRRRGKNENEFEKRELIFK 29
> SPBC25H2.07
Length=138
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 26/28 (92%), Gaps = 0/28 (0%)
Query 23 MPKNKGKGGKNRRRGKNDNEGEKRELQF 50
MPKNKGKGGKNRRRGKN+NE EKREL +
Sbjct 1 MPKNKGKGGKNRRRGKNENENEKRELTY 28
> At2g04520
Length=145
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 26/29 (89%), Gaps = 0/29 (0%)
Query 23 MPKNKGKGGKNRRRGKNDNEGEKRELQFK 51
MPKNKGKGGKNR+RGKN+ + EKREL FK
Sbjct 1 MPKNKGKGGKNRKRGKNEADDEKRELIFK 29
> At5g35680
Length=145
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 26/29 (89%), Gaps = 0/29 (0%)
Query 23 MPKNKGKGGKNRRRGKNDNEGEKRELQFK 51
MPKNKGKGGKNR+RGKN+ + EKREL FK
Sbjct 1 MPKNKGKGGKNRKRGKNEADDEKRELIFK 29
> CE17962
Length=216
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%), Gaps = 0/29 (0%)
Query 23 MPKNKGKGGKNRRRGKNDNEGEKRELQFK 51
MPKNKGKGGKNRRRGKN+N+ KREL K
Sbjct 1 MPKNKGKGGKNRRRGKNENDFMKRELDLK 29
> CE21225
Length=458
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query 12 QQHQLNASCVKMPKNKGKGGKNRR---RGKNDNEGEK 45
Q +LN + ++PK GK G + R R N+NEG+K
Sbjct 80 QSDRLNLASCELPKKGGKKGAHLREENRDSNENEGKK 116
> CE15592
Length=1008
Score = 27.7 bits (60), Expect = 6.0, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 0/20 (0%)
Query 17 NASCVKMPKNKGKGGKNRRR 36
+A+ KMPKNKGK GK+ R
Sbjct 989 DATNKKMPKNKGKSGKDLER 1008
> Hs19913408
Length=1621
Score = 26.9 bits (58), Expect = 8.0, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 0/21 (0%)
Query 24 PKNKGKGGKNRRRGKNDNEGE 44
PK KG+G K R+ ++NEG+
Sbjct 1532 PKGKGRGAKKRKASGSENEGD 1552
Lambda K H
0.314 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1161614636
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40