bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eace_2445_orf1 Length=110 Score E Sequences producing significant alignments: (Bits) Value YJL092w 47.4 6e-06 At4g25120 40.0 0.001 SPAC4H3.05 39.3 0.002 At4g10020 26.9 8.6 > YJL092w Length=1174 Score = 47.4 bits (111), Expect = 6e-06, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 23/93 (24%) Query 8 LDFTDLTVKALKLLEPPATRAELGAQWPYLVVDEFQDTNSNQFKFICLLALQRPPNIQTL 67 LDF DL + +LL TR + + +++VDEFQDTN Q + L A Sbjct 217 LDFDDLLMYTFRLL----TRVRVLSNIKHVLVDEFQDTNGIQLDLMFLFA---------- 262 Query 68 HTAVGNPTLPNSTPGRGGVTVVGDDDQSIYKWR 100 GN L G+T+VGD DQSIY +R Sbjct 263 ---KGNHHLSR------GMTIVGDPDQSIYAFR 286 > At4g25120 Length=938 Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 25/92 (27%) Query 8 LDFTDLTVKALKLLEP-PATRAELGAQWPYLVVDEFQDTNSNQFKFICLLALQRPPNIQT 66 LD+ DL ++ LL P E W ++VDEFQDT++ Q+K + +L Sbjct 417 LDYHDLISCSVTLLSDFPEVFKECQDTWKAIIVDEFQDTSTMQYKLLRMLG--------- 467 Query 67 LHTAVGNPTLPNSTPGRGGVTVVGDDDQSIYK 98 +T+VGDDDQ K Sbjct 468 ---------------SHNHITIVGDDDQITVK 484 > SPAC4H3.05 Length=887 Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 23/65 (35%) Query 36 YLVVDEFQDTNSNQFKFICLLALQRPPNIQTLHTAVGNPTLPNSTPGRGGVTVVGDDDQS 95 ++++DEFQDT+ Q+ + LLALQ NS +T+VGD DQS Sbjct 234 HILIDEFQDTSKIQYFLVKLLALQ------------------NSD-----ITIVGDPDQS 270 Query 96 IYKWR 100 IY +R Sbjct 271 IYGFR 275 > At4g10020 Length=389 Score = 26.9 bits (58), Expect = 8.6, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 0/39 (0%) Query 12 DLTVKALKLLEPPATRAELGAQWPYLVVDEFQDTNSNQF 50 DL + L+ PPAT + WP L F + N + Sbjct 3 DLLNSVMNLVAPPATMVVMAFAWPLLSFISFSERAYNSY 41 Lambda K H 0.319 0.138 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1195973986 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40