bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_3146_orf1
Length=113
Score E
Sequences producing significant alignments: (Bits) Value
CE09101 34.3 0.062
7291160 32.0 0.29
CE12220 30.4 0.95
At5g62510 29.6 1.6
Hs22043508 29.3 1.6
Hs9790173 28.9 2.6
At5g04130 28.1 4.3
At5g17070 27.7 4.8
> CE09101
Length=378
Score = 34.3 bits (77), Expect = 0.062, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query 11 FAWERARDYLFALVLSFTAPPITLQRLCEVVLKPPHRELEKFYFIIRKLLRVRD 64
F+ E + +++ + SF P T QRLCE++++P + Y I K LR D
Sbjct 155 FSTEESMEFVLSKAKSFDGFPFTWQRLCELLIEP-----MRHYNTIDKFLRAVD 203
> 7291160
Length=606
Score = 32.0 bits (71), Expect = 0.29, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query 11 FAWERARDYLFALVLSFTAPPITLQRLCEVVLKPPHRELEKFYFIIRKLLR 61
F +E + L + F A P T+QRLCE+++ P K Y I K +R
Sbjct 80 FNYETMKSSLLERLDLFNAAPFTVQRLCELLIDP-----RKQYSRIDKFMR 125
> CE12220
Length=170
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query 55 IIRKLLRVRDCSDEAPLRVLFPLDSSLSQRLAEANAVSEKLRNASAALF 103
II+ LL + EA +++ D +LSQR A NA+ +K +A + L+
Sbjct 106 IIKNLL----AAHEATMKIFDNKDQTLSQREAAVNALKKKYPHAPSTLY 150
> At5g62510
Length=420
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query 27 FTAPPITLQRLCEVVLKPPHRELEKFYFIIRK---LLRVRDCSDE-----APLR 72
F AP I L L E++ + PH+ L +F + ++ L+R R S+ +PLR
Sbjct 39 FVAPEIPLDLLIEILTRLPHKSLMRFKCVSKQWSSLIRSRFFSNRYLTVASPLR 92
> Hs22043508
Length=417
Score = 29.3 bits (64), Expect = 1.6, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query 13 WERARDYLFALVLSFTAPPITLQRLCEVVLKP--PHRELEKFYFIIRKLLRVRDC 65
++ ++ + +V F P T+QRLCE++ P + +KF + K + V C
Sbjct 80 FDEMKERILKIVTGFNGIPFTIQRLCELLTDPRRNYTGTDKFLRGVEKNVMVVSC 134
> Hs9790173
Length=453
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 0/32 (0%)
Query 13 WERARDYLFALVLSFTAPPITLQRLCEVVLKP 44
++ ++ + +V F P T+QRLCE++ P
Sbjct 158 FDEMKERILKIVTGFNGIPFTIQRLCELLTDP 189
> At5g04130
Length=760
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 0/30 (0%)
Query 72 RVLFPLDSSLSQRLAEANAVSEKLRNASAA 101
R+ F L S LSQRL + NA+S + + A+
Sbjct 51 RLKFQLTSVLSQRLIQRNAISSRFLSTEAS 80
> At5g17070
Length=254
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 12/14 (85%), Gaps = 0/14 (0%)
Query 29 APPITLQRLCEVVL 42
PP TLQRLCE++L
Sbjct 132 GPPFTLQRLCEILL 145
Lambda K H
0.326 0.140 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1185472426
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40