bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
164,496 sequences; 82,071,388 total letters
Query= Eace_0215_orf1
Length=91
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_033190 hypothetical protein ; K06063 SNW domain-con... 94.4 9e-20
xla:734970 snw1, MGC132028, bx42, ncoa-62, prp45, prpf45, skii... 61.6 6e-10
cel:T27F2.1 skp-1; mammalian SKIP (Ski interacting protein) ho... 61.6 6e-10
hsa:22938 SNW1, Bx42, MGC119379, NCOA-62, PRPF45, Prp45, SKIIP... 59.3 3e-09
ath:AT1G77180 chromatin protein family; K06063 SNW domain-cont... 59.3 3e-09
mmu:66354 Snw1, 2310008B08Rik, AW048543, MGC55033, NCoA-62, SK... 58.9 4e-09
dre:100334141 SKI-interacting protein-like 56.2 2e-08
dre:321852 snw1, MGC123090, fb37b08, skiip, wu:fb37b08, zgc:12... 55.8 3e-08
dre:100329938 SKI-interacting protein-like 55.5 4e-08
pfa:PFB0875c chromatin-binding protein, putative; K06063 SNW d... 42.7 3e-04
cel:E01F3.1 pde-3; PhosphoDiEsterase family member (pde-3); K1... 31.2 0.94
> tgo:TGME49_033190 hypothetical protein ; K06063 SNW domain-containing
protein 1
Length=557
Score = 94.4 bits (233), Expect = 9e-20, Method: Composition-based stats.
Identities = 50/119 (42%), Positives = 66/119 (55%), Gaps = 28/119 (23%)
Query 1 PRASRLCVSDASLGSYSLSTAPIRPLK----------------------------STSNN 32
P +S LCVSD S+GS++LS + P + S N
Sbjct 17 PASSSLCVSDPSVGSFALSAGTVVPARVKVRETAAETRRTGRDAVGTLAALKEERQLSLN 76
Query 33 KSSISIPPYLHRQGFVPKCEEDFGGGGSYPEIFVAQFPLGMGKNMDGGLSSSTLSLQVG 91
+ PPY R+GFVP+ EEDFGGGG++PEI VAQFPLGMGK G ++ST++LQ+G
Sbjct 77 RDRSGPPPYGQRKGFVPRSEEDFGGGGAFPEILVAQFPLGMGKKKSGAAAASTVALQLG 135
> xla:734970 snw1, MGC132028, bx42, ncoa-62, prp45, prpf45, skiip;
SNW domain containing 1; K06063 SNW domain-containing protein
1
Length=535
Score = 61.6 bits (148), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
Query 39 PPYLHRQGFVPKCEEDFGGGGSYPEIFVAQFPLGMGKNMDGGLSSSTLSLQV 90
PPY HR+G+VP+ EDFG GG++PEI VAQ+PL MG+ S+ L++QV
Sbjct 42 PPYGHRKGWVPRSLEDFGDGGAFPEIHVAQYPLDMGRKKK---MSNALAVQV 90
> cel:T27F2.1 skp-1; mammalian SKIP (Ski interacting protein)
homolog family member (skp-1); K06063 SNW domain-containing
protein 1
Length=535
Score = 61.6 bits (148), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 35/53 (66%), Gaps = 0/53 (0%)
Query 39 PPYLHRQGFVPKCEEDFGGGGSYPEIFVAQFPLGMGKNMDGGLSSSTLSLQVG 91
PPY R F P+ EDFG GG++PEI VAQFPLG+G G +TL+LQ G
Sbjct 45 PPYGKRTSFRPRGPEDFGDGGAFPEIHVAQFPLGLGLGDMRGKPENTLALQYG 97
> hsa:22938 SNW1, Bx42, MGC119379, NCOA-62, PRPF45, Prp45, SKIIP,
SKIP; SNW domain containing 1; K06063 SNW domain-containing
protein 1
Length=536
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query 27 KSTSNNKSSISIPPYLHRQGFVPKCEEDFGGGGSYPEIFVAQFPLGMGKNMDGGLSSSTL 86
+ TS S PPY +R+G++P+ EDFG GG++PEI VAQ+PL MG+ S+ L
Sbjct 30 RQTSLVSSRREPPPYGYRKGWIPRLLEDFGDGGAFPEIHVAQYPLDMGRKKK---MSNAL 86
Query 87 SLQV 90
++QV
Sbjct 87 AIQV 90
> ath:AT1G77180 chromatin protein family; K06063 SNW domain-containing
protein 1
Length=613
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query 24 RPLKSTSNNKSSIS---IPPYLHRQGFVPKCEEDFGGGGSYPEIFVAQFPLGMGKNMDGG 80
R +S + SSI +P YL+RQG PK EDFG GG++PEI + Q+PL MGKN
Sbjct 29 RVTESETVKSSSIKFKVVPAYLNRQGLRPKNPEDFGDGGAFPEIHLPQYPLLMGKNKSNK 88
Query 81 LSSSTLSLQV 90
+ TL + V
Sbjct 89 PGAKTLPVTV 98
> mmu:66354 Snw1, 2310008B08Rik, AW048543, MGC55033, NCoA-62,
SKIP, Skiip; SNW domain containing 1; K06063 SNW domain-containing
protein 1
Length=536
Score = 58.9 bits (141), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
Query 39 PPYLHRQGFVPKCEEDFGGGGSYPEIFVAQFPLGMGKNMDGGLSSSTLSLQV 90
PPY +R+G++P+ EDFG GG++PEI VAQ+PL MG+ S+ L++QV
Sbjct 42 PPYGYRKGWIPRLLEDFGDGGAFPEIHVAQYPLDMGRKKK---MSNALAIQV 90
> dre:100334141 SKI-interacting protein-like
Length=344
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Query 39 PPYLHRQGFVPKCEEDFGGGGSYPEIFVAQFPLGMGKNMDGGLSSSTLSLQV 90
PPY R+ +VP+ EDFG GG++PEI VAQ+PL MG+ +S+ L++QV
Sbjct 42 PPYGFRKSWVPRALEDFGDGGAFPEIHVAQYPLEMGRKKR---TSNALAVQV 90
> dre:321852 snw1, MGC123090, fb37b08, skiip, wu:fb37b08, zgc:123090;
SNW domain containing 1; K06063 SNW domain-containing
protein 1
Length=536
Score = 55.8 bits (133), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Query 39 PPYLHRQGFVPKCEEDFGGGGSYPEIFVAQFPLGMGKNMDGGLSSSTLSLQV 90
PPY R+ +VP+ EDFG GG++PEI VAQ+PL MG+ +S+ L++QV
Sbjct 42 PPYGFRKSWVPRALEDFGDGGAFPEIHVAQYPLEMGRKKR---TSNALAVQV 90
> dre:100329938 SKI-interacting protein-like
Length=464
Score = 55.5 bits (132), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Query 39 PPYLHRQGFVPKCEEDFGGGGSYPEIFVAQFPLGMGKNMDGGLSSSTLSLQV 90
PPY R+ +VP+ EDFG GG++PEI VAQ+PL MG+ +S+ L++QV
Sbjct 42 PPYGFRKSWVPRALEDFGDGGAFPEIHVAQYPLEMGRKKR---TSNALAVQV 90
> pfa:PFB0875c chromatin-binding protein, putative; K06063 SNW
domain-containing protein 1
Length=482
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 0/38 (0%)
Query 41 YLHRQGFVPKCEEDFGGGGSYPEIFVAQFPLGMGKNMD 78
YL R+ C EDF GGG+YPEI + Q+P +G D
Sbjct 47 YLKRRHLRITCNEDFQGGGAYPEIHMNQYPNNIGLKSD 84
> cel:E01F3.1 pde-3; PhosphoDiEsterase family member (pde-3);
K13296 cGMP-inhibited 3',5'-cyclic phosphodiesterase [EC:3.1.4.17]
Length=578
Score = 31.2 bits (69), Expect = 0.94, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 0/45 (0%)
Query 1 PRASRLCVSDASLGSYSLSTAPIRPLKSTSNNKSSISIPPYLHRQ 45
P +R+ +D G Y LS P+R T S+ PP+ H Q
Sbjct 254 PYHNRIHAADVLHGCYYLSAHPVRSTFLTPKTPDSVLTPPHPHHQ 298
Lambda K H
0.314 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2007827920
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
Posted date: Sep 16, 2011 8:45 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40