bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
164,496 sequences; 82,071,388 total letters
Query= Eace_1091_orf2
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_025260 DNA-directed RNA polymerase II largest subun... 431 2e-120
bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II lar... 362 6e-100
tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit (... 329 6e-90
cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymer... 303 3e-82
pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006 ... 279 7e-75
ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); ... 232 1e-60
mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II (D... 219 1e-56
hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2, RP... 218 1e-56
dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA direct... 217 5e-56
cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1); K... 209 6e-54
sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K030... 202 1e-51
ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA pol... 133 9e-31
cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member... 131 3e-30
tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit ... 130 3e-30
sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA... 129 1e-29
pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit (E... 128 2e-29
bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain cont... 128 3e-29
dre:100334143 polymerase (RNA) III (DNA directed) polypeptide ... 126 7e-29
mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1, RP... 126 1e-28
tgo:TGME49_106290 DNA-directed RNA polymerase III largest subu... 125 2e-28
cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03... 125 2e-28
hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III ... 125 2e-28
cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA pol... 120 6e-27
xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa; K... 119 1e-26
ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA pol... 117 4e-26
tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directe... 116 1e-25
hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA... 114 3e-25
mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1... 114 4e-25
bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2... 112 1e-24
pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymer... 112 1e-24
dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polym... 112 1e-24
tgo:TGME49_044880 DNA-directed RNA polymerase I largest subuni... 111 3e-24
cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-direct... 102 2e-21
sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-direct... 99.0 2e-20
ath:AT1G63020 NRPD1A; NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DN... 58.2 3e-08
tgo:TGME49_100690 RNA polymerase Rpb1, domain 5 family protein... 48.1 3e-05
eco:b3988 rpoC, ECK3979, JW3951, tabB; RNA polymerase, beta pr... 42.4 0.002
ath:ArthCp012 rpoC2; RNA polymerase beta'' chain; K03046 DNA-d... 42.0 0.003
bbo:BBOV_V000110 rpoC2-N-terminal; K03046 DNA-directed RNA pol... 40.0 0.008
tpv:TP05_0042 DNA-directed RNA polymerase subunit beta'' (EC:2... 35.4 0.19
tgo:TGME49_064430 hypothetical protein 33.5 0.76
xla:397920 numa; nuclear/mitotic apparatus protein 33.5 0.80
cpv:cgd4_1390 ABC transporter 32.3 2.0
cpv:cgd6_3640 protein disulfide isomerase ; secreted protein w... 31.2 4.1
pfa:MAL7P1.32 nucleotide excision repair protein, putative; K1... 31.2 4.1
dre:100332160 BRCA1-A complex subunit RAP80-like 31.2 4.5
dre:30520 irx3a, MGC109805, hm:zehn0543, id:ibd3380, iro3, irx... 31.2 4.7
mmu:110920 Hspa13, 1600002I10Rik, AV006182, B230217N24Rik, Stc... 30.8 5.8
> tgo:TGME49_025260 DNA-directed RNA polymerase II largest subunit,
putative (EC:2.7.7.6 3.5.1.16); K03006 DNA-directed RNA
polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1892
Score = 431 bits (1107), Expect = 2e-120, Method: Compositional matrix adjust.
Identities = 204/270 (75%), Positives = 236/270 (87%), Gaps = 2/270 (0%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
+RSLPHF KFDYSP+SRGFVE+SYL+GL P ELFFHAMGGREGIIDTACKTSETGYIQRR
Sbjct 807 ERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMGGREGIIDTACKTSETGYIQRR 866
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHD 120
LMKAMEDV V YDRTVRNS EVLQFLYGEDGMSGE+VEDQ +ELM +D EK++R+YRHD
Sbjct 867 LMKAMEDVMVYYDRTVRNSICEVLQFLYGEDGMSGEFVEDQTVELMTLDNEKLKRLYRHD 926
Query 121 LDQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIFPDGEVKQHIPI 180
+DQESYGKGW L++ELR ++ D+ QQ LE+E+EAI+EDK RLC+ IF DGE KQHIPI
Sbjct 927 VDQESYGKGW-LSDELRNEILTDYELQQPLEEEFEAIREDKNRLCRHIFKDGETKQHIPI 985
Query 181 NIMRLLEFAKAQFPPSVEQLKKQDPVAIAKSVSELLNDKLIVVKQTCKADTISAEVQENA 240
NI+RLLEFAKAQF PS + +KQ P+ IA+ V+ELLN+KL+VVKQT AD ISAEVQENA
Sbjct 986 NILRLLEFAKAQF-PSGDSSRKQSPIEIARKVNELLNEKLVVVKQTTNADAISAEVQENA 1044
Query 241 TVFMKAHLRTVLNSRRLMEREQLGVKAVHW 270
T+FMKAHLRTVLNSRRL+ERE +G KA+ W
Sbjct 1045 TIFMKAHLRTVLNSRRLLERECIGPKALQW 1074
> bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II largest
subunit (EC:2.7.7.6); K03006 DNA-directed RNA polymerase
II subunit RPB1 [EC:2.7.7.6]
Length=1746
Score = 362 bits (930), Expect = 6e-100, Method: Compositional matrix adjust.
Identities = 166/270 (61%), Positives = 206/270 (76%), Gaps = 1/270 (0%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
DRSLPHF K DY PESRGFV +SYL+GL PQE+FFHAMGGREG+IDTACKTSETGY+QRR
Sbjct 794 DRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGVIDTACKTSETGYVQRR 853
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHD 120
LMKAMED+ V YD+TVR+ ++LQFLYGEDGM EYVEDQ ++LM++D + R+Y HD
Sbjct 854 LMKAMEDIMVHYDKTVRSGGGDILQFLYGEDGMGAEYVEDQTLDLMKLDFASLNRLYAHD 913
Query 121 LDQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIFPDGEVKQHIPI 180
E+YG GWIL+E +RT + DFS Q +L +EY+ I + K LCK +FPDGE +QH+PI
Sbjct 914 FRNENYGVGWILDESVRTNILTDFSKQVILVEEYQRILDMKAILCKQVFPDGEARQHLPI 973
Query 181 NIMRLLEFAKAQFPPSVEQLKKQDPVAIAKSVSELLNDKLIVVKQTCKADTISAEVQENA 240
NI RLLE+AK QFP + E K +PV IA+ V +LL D L +V + D ++AE QENA
Sbjct 974 NISRLLEYAKTQFPTTTESRKLMNPVDIAQRVQQLL-DSLTIVVTSGPHDILAAEAQENA 1032
Query 241 TVFMKAHLRTVLNSRRLMEREQLGVKAVHW 270
T+ +KAHL T LNSRRLMERE++G A W
Sbjct 1033 TILIKAHLSTALNSRRLMEREKIGNLAFDW 1062
> tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit
(EC:2.7.7.6); K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1681
Score = 329 bits (844), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 157/270 (58%), Positives = 199/270 (73%), Gaps = 4/270 (1%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
DRSLPHF K DY PESRGFV +SYL+GL PQE+FFHAMGGREGIIDTACKTSETGY+QRR
Sbjct 794 DRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTACKTSETGYVQRR 853
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHD 120
L+KAMEDV V YDRT RN E+LQFLYGEDGM EY+EDQ I+LM++D E+I R + HD
Sbjct 854 LIKAMEDVMVQYDRTARNGNGEILQFLYGEDGMGAEYIEDQFIDLMRLDDEEIHRRFSHD 913
Query 121 LDQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIFPDGEVKQHIPI 180
ESYG GWI +EE+R + DFS Q +L +E++ + + K +C+ IFP G+ QH+PI
Sbjct 914 FRSESYGLGWI-SEEIRNAILSDFSQQVILVEEFQKLLDLKKMICEEIFPSGDYSQHLPI 972
Query 181 NIMRLLEFAKAQFPPSVEQLKKQDPVAIAKSVSELLNDKLIVVKQTCKADTISAEVQENA 240
NI R+LE+A QFP S K +PV IA+ ++LL + LI++ + D +S E Q+NA
Sbjct 973 NIKRILEYATTQFPAS--STSKLNPVEIAQRTNKLL-ESLIIINTSGPNDILSEEAQQNA 1029
Query 241 TVFMKAHLRTVLNSRRLMEREQLGVKAVHW 270
T+ +KAHLR LNSR LME+ Q+ A+ W
Sbjct 1030 TILIKAHLRCHLNSRYLMEQVQISSLALDW 1059
> cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat ; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1902
Score = 303 bits (777), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 195/285 (68%), Gaps = 16/285 (5%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
DRSLPHF K+DY PESRGFV +SYL+GL PQE+FFHAMGGREGIIDTACKTSETGYIQRR
Sbjct 816 DRSLPHFLKYDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRR 875
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHD 120
L+KAMED V YDRTVRNS +++QFLYGEDGM+GE++EDQVIEL+QM+A + YRH+
Sbjct 876 LIKAMEDCMVQYDRTVRNSNGDIIQFLYGEDGMAGEFIEDQVIELLQMEAAVFQHKYRHN 935
Query 121 LDQESYGKGWI-LNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIFPDGEVKQHIP 179
L+ +G W + L L D +Q +L EY+ + D+ +L K IFPDGE +QH+P
Sbjct 936 LEHPRWGSSWAGVQPSLIKNLQFDLESQNILNSEYKQLVTDREQLGKDIFPDGETRQHLP 995
Query 180 INIMRLLEFAKAQFPPSVEQL---KKQDPVAIAKSVSELLNDKLIVVKQTCKA------- 229
INI R+++ A+ +FP V K PV I K V LL DKL++ K
Sbjct 996 ININRIIQMAQQKFPQRVSDTSSSKDWGPVYIIKKVESLL-DKLLLWKNVGIINDEGNKS 1054
Query 230 ----DTISAEVQENATVFMKAHLRTVLNSRRLMEREQLGVKAVHW 270
D+I AEVQ+NAT + H+R+ L S++++E ++LG A W
Sbjct 1055 NFVFDSIIAEVQKNATTLLGIHIRSSLASKKILEVDRLGPTAFEW 1099
> pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=2457
Score = 279 bits (714), Expect = 7e-75, Method: Composition-based stats.
Identities = 122/196 (62%), Positives = 163/196 (83%), Gaps = 3/196 (1%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
RSLPHF KFDY PESRGFV +SYL+GL PQE+FFHAMGGREGIIDTACKTSETGYIQRRL
Sbjct 938 RSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRL 997
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHDL 121
+KAMEDV V YDRTVRNS +++QFLYGEDGM+GEY+EDQ+I+LM++D ++I ++Y+++
Sbjct 998 IKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGMAGEYIEDQIIDLMKLDNKEINKLYKYNF 1057
Query 122 DQESYGKGWIL---NEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIFPDGEVKQHI 178
D+E +GK + + N+ R ++D++ Q +L E+E + + K LCK IFPDG+++QH+
Sbjct 1058 DEEPFGKDYYIGNKNDGSRNTSYIDYNKQNILNQEFEELYKCKNYLCKEIFPDGDIRQHL 1117
Query 179 PINIMRLLEFAKAQFP 194
PIN+ RL+E+AK+QFP
Sbjct 1118 PINMNRLIEYAKSQFP 1133
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query 204 DPVAIAKSVSELLNDKLIVVKQTCKADTISAEVQENATVFMKAHLRTVLNSRRLMEREQL 263
+P+ + V+ L +KL+++KQ DT+S E Q NAT+ +KAHLRT LNS+ L + ++
Sbjct 1317 NPIDVVHKVNNFL-EKLVIIKQINSNDTLSVEAQNNATILLKAHLRTYLNSKLLTQTHKV 1375
Query 264 GVKAVHW 270
VK + W
Sbjct 1376 SVKGLDW 1382
> ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT);
DNA binding / DNA-directed RNA polymerase; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1840
Score = 232 bits (591), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/269 (44%), Positives = 174/269 (64%), Gaps = 5/269 (1%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
R+LPHF+K DY PESRGFVE+SYL GL PQE FFHAMGGREG+IDTA KTSETGYIQRRL
Sbjct 802 RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 861
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHDL 121
+KAMED+ V YD TVRNS +V+QFLYGEDGM ++E Q ++ ++M + R +++++
Sbjct 862 VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEI 921
Query 122 DQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIFPDGEVKQHIPIN 181
D E++ ++ +E L + + V + EY ++ D+ +L I +G+ +P+N
Sbjct 922 DDENWNPTYLSDEHLEDLKGIR-ELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVN 980
Query 182 IMRLLEFAKAQFPPSVEQLKKQDPVAIAKSVSELLNDKLIVVKQTCKADTISAEVQENAT 241
I R + A+ F + ++ PV I +V + L ++L+VV D +S E Q+NAT
Sbjct 981 IKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDK-LQERLLVVPGD---DALSVEAQKNAT 1036
Query 242 VFMKAHLRTVLNSRRLMEREQLGVKAVHW 270
+F LR+ L S+R++E +L +A W
Sbjct 1037 LFFNILLRSTLASKRVLEEYKLSREAFEW 1065
> mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II
(DNA directed) polypeptide A (EC:2.7.7.6); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1932
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 167/269 (62%), Gaps = 6/269 (2%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
R+LPHF K DY PESRGFVE+SYL GL P E FFHAMGGREG+IDTA KT+ETGYIQRRL
Sbjct 805 RTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRL 864
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHDL 121
+K+ME V V YD TVRNS +V+Q YGEDG++GE VE Q + ++ + + +R D
Sbjct 865 IKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDY 924
Query 122 DQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIFPDGEVKQHIPIN 181
E + L E+L + + Q LE E+E ++ED+ + + IFP G+ K +P N
Sbjct 925 TNERALR-RTLQEDLVKDVLSNAHIQNELEREFERMREDR-EVLRVIFPTGDSKVVLPCN 982
Query 182 IMRLLEFAKAQFPPSVEQLKKQDPVAIAKSVSELLNDKLIVVKQTCKADTISAEVQENAT 241
++R++ A+ F + P+ + + V E L+ KL++V D +S + QENAT
Sbjct 983 LLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKE-LSKKLVIVNGD---DPLSRQAQENAT 1038
Query 242 VFMKAHLRTVLNSRRLMEREQLGVKAVHW 270
+ HLR+ L SRR+ E +L +A W
Sbjct 1039 LLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
> hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2,
RPOL2, RpIILS, hRPB220, hsRPB1; polymerase (RNA) II (DNA directed)
polypeptide A, 220kDa (EC:2.7.7.6 2.7.7.48); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1970
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 167/269 (62%), Gaps = 6/269 (2%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
R+LPHF K DY PESRGFVE+SYL GL P E FFHAMGGREG+IDTA KT+ETGYIQRRL
Sbjct 805 RTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRL 864
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHDL 121
+K+ME V V YD TVRNS +V+Q YGEDG++GE VE Q + ++ + + +R D
Sbjct 865 IKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDY 924
Query 122 DQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIFPDGEVKQHIPIN 181
E + L E+L + + Q LE E+E ++ED+ + + IFP G+ K +P N
Sbjct 925 TNERALR-RTLQEDLVKDVLSNAHIQNELEREFERMREDR-EVLRVIFPTGDSKVVLPCN 982
Query 182 IMRLLEFAKAQFPPSVEQLKKQDPVAIAKSVSELLNDKLIVVKQTCKADTISAEVQENAT 241
++R++ A+ F + P+ + + V E L+ KL++V D +S + QENAT
Sbjct 983 LLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKE-LSKKLVIVNGD---DPLSRQAQENAT 1038
Query 242 VFMKAHLRTVLNSRRLMEREQLGVKAVHW 270
+ HLR+ L SRR+ E +L +A W
Sbjct 1039 LLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067
> dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA directed)
polypeptide A; K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1972
Score = 217 bits (552), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 117/269 (43%), Positives = 166/269 (61%), Gaps = 6/269 (2%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
R+LPHF K DY PESRGFVE+SYL GL P E FFHAMGGREG+IDTA KT+ETGYIQRRL
Sbjct 802 RTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRL 861
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHDL 121
+K+ME V V YD TVRNS +V+Q YGEDG++GE VE Q + ++ + + ++ D
Sbjct 862 IKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSHKAFEKKFKFDY 921
Query 122 DQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIFPDGEVKQHIPIN 181
E + L E++ + + Q LE E+E ++ED+ + ++IFP G+ K +P N
Sbjct 922 ANERALR-RTLQEDVVKDVMTNAHVQSSLEREFEKMREDR-EILRAIFPTGDSKVVLPCN 979
Query 182 IMRLLEFAKAQFPPSVEQLKKQDPVAIAKSVSELLNDKLIVVKQTCKADTISAEVQENAT 241
+ R++ A+ F + +P + V E L+ KL++V D +S + QENAT
Sbjct 980 LARMIWNAQKIFRINPRAPTDLNPARVVDGVKE-LSKKLVIVNGD---DQLSRQAQENAT 1035
Query 242 VFMKAHLRTVLNSRRLMEREQLGVKAVHW 270
+ HLR+ L S+R+ E +L +A W
Sbjct 1036 LLFNIHLRSTLCSKRMTEEFRLSTEAFDW 1064
> cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1);
K03006 DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1852
Score = 209 bits (533), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 168/270 (62%), Gaps = 8/270 (2%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
R+LPHF K DY PES+GFVE+SYL GL P E FFHAMGGREG+IDTA KT+ETGYIQRRL
Sbjct 795 RTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRL 854
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHDL 121
+KAME V V+YD TVRNS +++Q YGEDG+ G +VE+Q + M+ + R +R DL
Sbjct 855 IKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDL 914
Query 122 -DQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIFPDGEVKQHIPI 180
D + K + +E++ ++ ++E E+ ++ED+ RL + IFP G+ K +P
Sbjct 915 TDNKFLRKNY--SEDVVREIQESEDGISLVESEWSQLEEDR-RLLRKIFPRGDAKIVLPC 971
Query 181 NIMRLLEFAKAQFPPSVEQLKKQDPVAIAKSVSELLNDKLIVVKQTCKADTISAEVQENA 240
N+ RL+ A+ F + + P+ + V E L+ KLI+V D IS + Q NA
Sbjct 972 NLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRE-LSKKLIIVSGN---DEISKQAQYNA 1027
Query 241 TVFMKAHLRTVLNSRRLMEREQLGVKAVHW 270
T+ M LR+ L ++ + + +L +A W
Sbjct 1028 TLLMNILLRSTLCTKNMCTKSKLNSEAFDW 1057
> sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1733
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 165/272 (60%), Gaps = 10/272 (3%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
DR+LPHFSK DYSPES+GFVE+SYL GL PQE FFHAMGGREG+IDTA KT+ETGYIQRR
Sbjct 781 DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR 840
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHD 120
L+KA+ED+ V YD T RNS V+QF+YGEDGM ++E Q ++ + + YR D
Sbjct 841 LVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVD 900
Query 121 LDQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIFPDGEVKQHIPI 180
L + L E +++ D Q +L++EY+ + +D+ + + +F DGE +P+
Sbjct 901 LLNTDHTLDPSLLES-GSEILGDLKLQVLLDEEYKQLVKDR-KFLREVFVDGEANWPLPV 958
Query 181 NIMRLLEFAKAQFPPSVEQLKKQDPVA--IAKSVSELLNDKLIVVKQTCKADTISAEVQE 238
NI R+++ A+ F ++ K D I V + L + L+V++ + I Q
Sbjct 959 NIRRIIQNAQQTF--HIDHTKPSDLTIKDIVLGVKD-LQENLLVLR---GKNEIIQNAQR 1012
Query 239 NATVFMKAHLRTVLNSRRLMEREQLGVKAVHW 270
+A LR+ L +RR+++ +L +A W
Sbjct 1013 DAVTLFCCLLRSRLATRRVLQEYRLTKQAFDW 1044
> ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding / zinc ion binding; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1376
Score = 133 bits (334), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 100/169 (59%), Gaps = 15/169 (8%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
DRSLPHF + SP ++GFV +S+ +GL E FFH MGGREG++DTA KT+ TGY+ RR
Sbjct 816 DRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRR 875
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHD 120
LMKA+ED+ V YD TVRN++ +LQF YG+DGM +E + + ++ ++ +
Sbjct 876 LMKALEDLLVHYDNTVRNASGCILQFTYGDDGMDPALMEGK--DGAPLNFNRLFLKVQAT 933
Query 121 LDQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIF 169
S+ ++ +EEL K E E ++ DK R+C F
Sbjct 934 CPPRSH-HTYLSSEELSQKF------------EEELVRHDKSRVCTDAF 969
> cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member
(rpc-1); K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1400
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 78/99 (78%), Gaps = 0/99 (0%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
+RSLPHF + +PE++GFV +S+ +GL P E FFH MGGREG++DTA KT+ETGY+QRR
Sbjct 811 ERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRR 870
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVE 99
L+K +ED+ SYD TVR+S +V++F++GEDG+ +E
Sbjct 871 LVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMME 909
> tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1617
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 73/93 (78%), Gaps = 0/93 (0%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
R+LPHF+ +SRGFV +S+ TGL P+E FFH M GREG+IDTA KTSETGY+QRRL
Sbjct 895 RTLPHFTMGCKDAKSRGFVANSFFTGLEPEEFFFHTMSGREGLIDTAVKTSETGYMQRRL 954
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMS 94
MK MED+ V YD +VR S +++QFLYG+DG+S
Sbjct 955 MKVMEDLSVCYDYSVRTSDGQIVQFLYGDDGLS 987
> sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA-directed
RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1460
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 71/93 (76%), Gaps = 0/93 (0%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
DRSLPHF K +P+S+GFV +S+ +GL P E FHA+ GREG++DTA KT+ETGY+ RR
Sbjct 829 DRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRR 888
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGM 93
LMK++ED+ YD TVR SA ++QF YG DG+
Sbjct 889 LMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGL 921
> pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=2356
Score = 128 bits (322), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/109 (51%), Positives = 81/109 (74%), Gaps = 0/109 (0%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
+R+LPHF ESRGFV++S+ TGL P E FFH M GREG++DTA KT+ETGY+QRR
Sbjct 926 NRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRR 985
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMD 109
LMKA+ED+ + YD +VR+ ++++QF+YG+D ++ Y+++ L Q D
Sbjct 986 LMKALEDLSIHYDYSVRSCDKQIVQFIYGDDALNPSYIDNNNTYLDQFD 1034
> bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain containing
protein; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1541
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 77/118 (65%), Gaps = 8/118 (6%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
R+LPHF +SRGFV +S+ +GL P+E FFH M GREG+IDTA KTSETGY+QRRL
Sbjct 868 RTLPHFDIGCMDAKSRGFVANSFFSGLGPEEFFFHTMSGREGLIDTAVKTSETGYMQRRL 927
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRH 119
MKA+E + V YD TVR + V+QFLYG+DG+ G + MD + +H
Sbjct 928 MKALEVLAVCYDHTVRTTDGHVVQFLYGDDGLGGAS--------LHMDTNALEPTLKH 977
> dre:100334143 polymerase (RNA) III (DNA directed) polypeptide
A, 155kDa-like; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=673
Score = 126 bits (317), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 84/119 (70%), Gaps = 3/119 (2%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
+RSLPHF K P ++GFV S+ +GL P E FFH M GREG++DTA KT+ETGY+QRR
Sbjct 202 NRSLPHFQKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 261
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVE--DQVIELMQMDAEKIRRVY 117
L+K++ED+ YD TVR+S +++QF+YG DG+ +E D+ +E ++ + IR VY
Sbjct 262 LVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRV-LDNIRAVY 319
> mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1,
RPC155; polymerase (RNA) III (DNA directed) polypeptide A (EC:2.7.7.6);
K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1390
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 85/119 (71%), Gaps = 3/119 (2%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
+RSLPHF K P ++GFV +S+ +GL P E FFH M GREG++DTA KT+ETGY+QRR
Sbjct 815 NRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVE--DQVIELMQMDAEKIRRVY 117
L+K++ED+ YD TVR+S +++QF+YG DG+ +E D+ +E ++ + I+ VY
Sbjct 875 LVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRV-LDNIKAVY 932
> tgo:TGME49_106290 DNA-directed RNA polymerase III largest subunit,
putative (EC:2.7.7.6); K03018 DNA-directed RNA polymerase
III subunit RPC1 [EC:2.7.7.6]
Length=1746
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 75/100 (75%), Gaps = 0/100 (0%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
R+LPHF +SRGFV S+ +GL P E FFH M GREG++DTA KT+ETGY+QRRL
Sbjct 891 RTLPHFPLNCRDAKSRGFVASSFYSGLQPDEFFFHTMSGREGLVDTAVKTAETGYMQRRL 950
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQ 101
MKA+ED+ + YD +VR S +++QF+YG+DG++ +ED+
Sbjct 951 MKALEDLSIRYDNSVRTSDGQIVQFVYGDDGLNPAMMEDK 990
> cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1871
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 78/102 (76%), Gaps = 0/102 (0%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
+R+LPHF SRGFV +S+ +GL P E FFH M GREG++DTA KT+ETGY+QRR
Sbjct 811 NRTLPHFKMNCVDGRSRGFVGNSFFSGLQPDEFFFHTMSGREGLVDTAVKTAETGYMQRR 870
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQV 102
L+KA+ED+ + YD+TVR S +++QF+YG+DG++ +E+++
Sbjct 871 LVKALEDLCIKYDQTVRTSDGQIIQFIYGDDGLNPMLMEEKL 912
> hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III
(DNA directed) polypeptide A, 155kDa (EC:2.7.7.6); K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1390
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 75/101 (74%), Gaps = 0/101 (0%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
+RSLPHF K P ++GFV +S+ +GL P E FFH M GREG++DTA KT+ETGY+QRR
Sbjct 815 NRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQ 101
L+K++ED+ YD TVR+S +++QF+YG DG+ +E +
Sbjct 875 LVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGK 915
> cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1737
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 69/92 (75%), Gaps = 0/92 (0%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
R+LP F FD SP + G+++ +LTG+ PQELFFH M GREG+IDTA KTS +GY+QR +
Sbjct 969 RTLPSFRCFDPSPRAGGYIDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCI 1028
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGM 93
+K +E ++V YD TVR+ V+QF YGEDGM
Sbjct 1029 IKHLEGIRVHYDSTVRDHDGSVIQFRYGEDGM 1060
> xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa;
K02999 DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1730
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 0/92 (0%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
RSLP F +D+SP S GFV +LTG+ P E FFH M GREG++DTA KTS +GY+QR +
Sbjct 938 RSLPCFQPYDFSPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCV 997
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGM 93
+K +E + V YD TVR+S ++QFLYGEDG+
Sbjct 998 IKHLEGLVVQYDLTVRDSDGSIIQFLYGEDGL 1029
> ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA polymerase/
zinc ion binding; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1670
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 70/92 (76%), Gaps = 0/92 (0%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
++LP F +D+SP + GF+ +L+GL PQE +FH M GREG++DTA KTS +GY+QR L
Sbjct 977 KTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1036
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGM 93
MK +E +KV+YD TVR++ ++QF YGEDG+
Sbjct 1037 MKNLESLKVNYDCTVRDADGSIIQFQYGEDGV 1068
> tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1996
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 68/92 (73%), Gaps = 0/92 (0%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
R+LP F+ D+ + GF+ +LTGL PQE FFH M GREG++DT KT+++GY+QR +
Sbjct 1220 RTLPCFAFGDFGSRAGGFISDRFLTGLRPQEYFFHCMSGREGLVDTCVKTAKSGYLQRCV 1279
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGM 93
+KAMEDV V YD TVR+S ++QF YGEDG+
Sbjct 1280 LKAMEDVIVCYDSTVRDSNCNIIQFKYGEDGI 1311
> hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA1,
RPA194, RPO1-4, RPO14; polymerase (RNA) I polypeptide A,
194kDa (EC:2.7.7.6); K02999 DNA-directed RNA polymerase I
subunit RPA1 [EC:2.7.7.6]
Length=1720
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 68/92 (73%), Gaps = 0/92 (0%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
+SLP F ++++P + GFV +LTG+ P E FFH M GREG++DTA KTS +GY+QR +
Sbjct 933 KSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCI 992
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGM 93
+K +E + V YD TVR+S V+QFLYGEDG+
Sbjct 993 IKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGL 1024
> mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1;
polymerase (RNA) I polypeptide A (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1717
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 68/92 (73%), Gaps = 0/92 (0%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
+SLP F ++++P + GFV +LTG+ P E FFH M GREG++DTA KTS +GY+QR +
Sbjct 940 KSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCI 999
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGM 93
+K +E + + YD TVR+S V+QFLYGEDG+
Sbjct 1000 IKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGL 1031
> bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2.7.7.6);
K02999 DNA-directed RNA polymerase I subunit RPA1
[EC:2.7.7.6]
Length=2016
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 66/92 (71%), Gaps = 0/92 (0%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
R+LP F+ D + GF+ +LTGL PQE FFH M GREG++DT KT+++GY+QR +
Sbjct 1241 RTLPSFAFGDLGARAGGFITDRFLTGLRPQEYFFHCMSGREGLVDTCVKTAKSGYLQRCI 1300
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGM 93
+KAMEDV YD TVR+S ++QF YGEDG+
Sbjct 1301 LKAMEDVICCYDATVRSSDGTIIQFSYGEDGI 1332
> pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=2914
Score = 112 bits (281), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/92 (55%), Positives = 66/92 (71%), Gaps = 0/92 (0%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
++LP F ++DY S G + +L GL PQE FFH M GREG+IDTA KT+++GYIQR L
Sbjct 1849 KTLPSFHRYDYGARSCGLITDCFLEGLRPQEYFFHCMSGREGLIDTAVKTAKSGYIQRCL 1908
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGM 93
+K ME V + YD TVRN ++QFLYGEDG+
Sbjct 1909 IKCMESVILHYDGTVRNEDNSIIQFLYGEDGI 1940
> dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polymerase
(RNA) I polypeptide A; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1693
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 78/117 (66%), Gaps = 3/117 (2%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
+SLP F ++ P S GFV +LTG+ P E FFH M GREG++DTA KTS +GY+QR +
Sbjct 926 KSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCV 985
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGM---SGEYVEDQVIELMQMDAEKIRR 115
+K +E + V YD TVR+S V+QFLYGEDG+ ++++ + ++ + E IR+
Sbjct 986 IKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPRQFPFIKDNYEVIRK 1042
> tgo:TGME49_044880 DNA-directed RNA polymerase I largest subunit,
putative (EC:2.7.7.49 2.7.7.6); K02999 DNA-directed RNA
polymerase I subunit RPA1 [EC:2.7.7.6]
Length=2768
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 68/92 (73%), Gaps = 0/92 (0%)
Query 1 DRSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRR 60
DRSLP F FD+ +RGF+ S+L+GL +E FFH M GREG++DTA KT+++GY+QR
Sbjct 1689 DRSLPAFLPFDFGSRARGFITSSFLSGLKEEEYFFHCMAGREGLVDTAVKTAKSGYLQRS 1748
Query 61 LMKAMEDVKVSYDRTVRNSAQEVLQFLYGEDG 92
+ K +E + V YD +VR++ ++QF+YG+DG
Sbjct 1749 VTKGLEALTVRYDGSVRDADDSIVQFVYGDDG 1780
> cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1805
Score = 102 bits (254), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 11/160 (6%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
++LP F+ +D + G + YL GL QE FFH M GREG++DTA KT+ +GY+QR +
Sbjct 1289 KTLPSFATYDLGSRAGGLITDRYLDGLHAQEFFFHCMSGREGLVDTAVKTARSGYLQRCI 1348
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEKIRRVYRHDL 121
+K +E + V+YD TVR+ ++QF+YG+DG+ + + + ++ D + + + D+
Sbjct 1349 LKGLESMIVNYDGTVRSEDDTIVQFIYGDDGI--DVSKSSYLSKLE-DLVRNKTLLERDV 1405
Query 122 D-QESYGKGWILNE-------ELRTKLFVDFSAQQVLEDE 153
+ES G ++ N E R LF Q +L DE
Sbjct 1406 KFEESMGNKFLNNSFEKVFKYENRQNLFKTCLNQNILSDE 1445
> sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1664
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 64/92 (69%), Gaps = 0/92 (0%)
Query 2 RSLPHFSKFDYSPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 61
++LP F ++ + G+V+ + +G+ PQE +FH M GREG+IDTA KTS +GY+QR L
Sbjct 964 KTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCL 1023
Query 62 MKAMEDVKVSYDRTVRNSAQEVLQFLYGEDGM 93
K +E V VSYD ++R++ ++QF+YG D +
Sbjct 1024 TKQLEGVHVSYDNSIRDADGTLVQFMYGGDAI 1055
> ath:AT1G63020 NRPD1A; NRPD1A (NUCLEAR RNA POLYMERASE D 1A);
DNA binding / DNA-directed RNA polymerase
Length=1453
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query 18 GFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 77
G +E+S+LTGL P E F H++ R+ + G + RRLM M D+ +YD TVR
Sbjct 794 GVIENSFLTGLNPLESFVHSVTSRDSSF--SGNADLPGTLSRRLMFFMRDIYAAYDGTVR 851
Query 78 NS-AQEVLQFLYGEDG 92
NS +++QF Y DG
Sbjct 852 NSFGNQLVQFTYETDG 867
> tgo:TGME49_100690 RNA polymerase Rpb1, domain 5 family protein
(EC:2.7.7.6)
Length=357
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query 15 ESRGF-----VEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVK 69
+RGF V S+ GL E F G R+GI+DT+ KT+ GY+ RRL++++++V
Sbjct 2 NARGFLFKIPVMQSFNKGLKAYEYFISCYGARKGILDTSLKTANAGYLTRRLVESIQEVV 61
Query 70 V 70
+
Sbjct 62 I 62
> eco:b3988 rpoC, ECK3979, JW3951, tabB; RNA polymerase, beta
prime subunit (EC:2.7.7.6); K03046 DNA-directed RNA polymerase
subunit beta' [EC:2.7.7.6]
Length=1407
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 0/54 (0%)
Query 20 VEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYD 73
+ ++ GL + F G R+G+ DTA KT+ +GY+ RRL+ +D+ V+ D
Sbjct 759 ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
> ath:ArthCp012 rpoC2; RNA polymerase beta'' chain; K03046 DNA-directed
RNA polymerase subunit beta' [EC:2.7.7.6]
Length=1376
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 0/44 (0%)
Query 27 GLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKV 70
GL E G R+G++DTA +TS+ GY+ RRL++ ++ + V
Sbjct 172 GLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVV 215
> bbo:BBOV_V000110 rpoC2-N-terminal; K03046 DNA-directed RNA polymerase
subunit beta' [EC:2.7.7.6]
Length=355
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 0/44 (0%)
Query 27 GLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKV 70
GL ++ + + R IID++ T+E+GY+ RRL++++ +V +
Sbjct 123 GLNLKDFIYSSFSARNSIIDSSLNTAESGYLTRRLIESLRNVYI 166
> tpv:TP05_0042 DNA-directed RNA polymerase subunit beta'' (EC:2.7.7.6);
K03046 DNA-directed RNA polymerase subunit beta'
[EC:2.7.7.6]
Length=363
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 0/54 (0%)
Query 17 RGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKV 70
+G++ + G ++ + RE IID++ +GY+ R+L++ + D+ +
Sbjct 116 KGYISSNLNYGFTFKDFILSSFKARESIIDSSVNIYSSGYLTRKLVEGLRDMNI 169
> tgo:TGME49_064430 hypothetical protein
Length=1587
Score = 33.5 bits (75), Expect = 0.76, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query 147 QQVLEDEYEAIKEDKLRLCKSIFPDGEVKQHIPINIMRLLEFAKAQFPPSVEQLKKQDPV 206
Q+ E E E++K++ LRL +++ QHI I+++ L+ A PP+ ++ +
Sbjct 514 QEQFEMENESLKDENLRLQEAVVSMQSRVQHI-IDVLHTLKTKNAGHPPTCDKTNEDLAE 572
Query 207 AIAKSVSELLNDKLIVVKQTCKADTISAEVQENA 240
A V++L+ + +V+ A T +A +Q A
Sbjct 573 ACIGLVAQLVTREAVVMPGV--AATEAAALQRAA 604
> xla:397920 numa; nuclear/mitotic apparatus protein
Length=2253
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query 188 FAKAQFPPSVEQLKKQDPVAIAKSVSELLNDKLIVVKQTCKADTISAEVQENATVFMKAH 247
+ KA+F V+ LK+Q+ IA SEL N +V ++ C+++ +S EV+ H
Sbjct 948 YKKAEFEAMVKVLKEQNSERIASLESELKNSLAVVKERKCESEKLSGEVE---------H 998
Query 248 LRTVLNSRRLMEREQLGVKAV 268
L+ L+ +E L K +
Sbjct 999 LKRQLDDSSQKHKEALAQKNI 1019
> cpv:cgd4_1390 ABC transporter
Length=1522
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query 151 EDEYEAIKEDKLRLCKSIFPDGEVKQHIPINIMRLLEF--------AKAQFPPSVEQLKK 202
ED+Y +KE L K+I E+ +I +N +R+LEF K FP +++ ++
Sbjct 1310 EDDYYRMKESSLERIKTITQVSEIDPNILLNSVRMLEFLSGIAYVPIKVDFPGNLKLIEV 1369
Query 203 QDPVAIAKSVSEL 215
D I S+ L
Sbjct 1370 LDSENIRSSLEIL 1382
> cpv:cgd6_3640 protein disulfide isomerase ; secreted protein
with thioredoxin, signal peptide plus ER retention motif
Length=575
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query 106 MQMDAEKIRRVYRHDLDQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLC 165
+ M EKI VY ++ K ++ +EE+ +K F +VLE + ED +
Sbjct 508 IDMQIEKIPLVYYFPFGEDKVSKMFLYDEEITSKTVTTFITDRVLE-----VSEDNDQAE 562
Query 166 KSIFPDGEVKQHI 178
++I PD +++ +
Sbjct 563 QNISPDSQIRDEL 575
> pfa:MAL7P1.32 nucleotide excision repair protein, putative;
K10847 DNA-repair protein complementing XP-A cells
Length=396
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query 122 DQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLC 165
DQE Y K N + F+ FS ++V+E+E E IK DK LC
Sbjct 175 DQEEYTKKINENFQKNKNEFI-FSIERVIENEEENIKSDKCFLC 217
> dre:100332160 BRCA1-A complex subunit RAP80-like
Length=914
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query 90 EDGMSGEYVEDQVIELMQMDAEKIRRVYRHDLDQES--YGKGWILNEELRTKLFVDFSA- 146
EDG ++++I +M+ DA+ H E + + +++ + D A
Sbjct 708 EDGGDAPAADEEIIMMMEQDADPAEPAAPHSEQMECPMCSRLFPISKIEMHAAYCDGEAD 767
Query 147 ------------QQVLEDEYEAIKE---DKLRLCKSIFPDGEVKQHIPINIMR 184
+Q++ED +++ K +K +C +FP E QH+P+ I R
Sbjct 768 QQSQVVRRTRNRRQIMEDTHQSEKSANLEKCSVCHGLFPLQEYIQHVPLCIER 820
> dre:30520 irx3a, MGC109805, hm:zehn0543, id:ibd3380, iro3, irx3,
wu:fk88a03, zgc:109805; iroquois homeobox protein 3a
Length=420
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 24/121 (19%)
Query 58 QRRLMKAMEDVKVSYDRT-----VRNSAQEVLQFLYGEDGMSGEYVEDQVIELMQMDAEK 112
+RRL K + RT V NS E G+DG E +++ I+L +D E
Sbjct 160 RRRLKKENKMTWTPRSRTDEEGNVYNSDHE------GDDGDKRE--DEEEIDLENIDTEN 211
Query 113 IRRVYRHDLDQESYGKGWILNEELRTKLFVDFSAQQVLEDEYEAIKEDKLRLCKSIFPDG 172
I + DLD++ +EL + L +D + + D YE ++ + RL K++ DG
Sbjct 212 IEN--KDDLDEQ---------DELHSDLKLDGRSDSEISDGYEDLQGPEQRLFKAMVKDG 260
Query 173 E 173
+
Sbjct 261 K 261
> mmu:110920 Hspa13, 1600002I10Rik, AV006182, B230217N24Rik, Stch;
heat shock protein 70 family, member 13; K09491 stress
70 protein chaperone microsome-associated 60kDa protein
Length=471
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query 60 RLMKAMEDVKVSYDRTVRNSAQ-EVLQFLYGEDGMSGEYVEDQVI--ELMQMDAEKIRRV 116
RL +A+E VK++ T+ SAQ VL + G+D + + ++ +L D + RV
Sbjct 287 RLRQAVEMVKLNL--TIHQSAQVSVLLTVEGKDSKEPQNGDSELPKDQLTPGDGHHVNRV 344
Query 117 YRHDLDQESYGKGWILNE-ELRTKLF 141
+R L + GK +L E E+ KLF
Sbjct 345 FRPGLSESKSGKSQVLFETEVSRKLF 370
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 10146160788
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
Posted date: Sep 16, 2011 8:45 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40