bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
164,496 sequences; 82,071,388 total letters
Query= Eace_1379_orf1
Length=133
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,... 203 1e-52
pfa:PFB0715w DNA-directed RNA polymerase II second largest sub... 193 1e-49
bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta... 169 2e-42
cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directe... 168 3e-42
tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7... 125 3e-29
ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA pol... 125 5e-29
sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6)... 116 2e-26
xla:398890 polr2b, MGC68569; polymerase (RNA) II (DNA directed... 107 9e-24
mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase ... 105 3e-23
hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RN... 105 4e-23
dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA dir... 103 2e-22
cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member... 100 1e-21
ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA pol... 75.5 4e-14
cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA poly... 75.1 6e-14
pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative... 74.3 1e-13
tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, put... 72.8 3e-13
sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K0302... 71.6 5e-13
ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA p... 69.7 2e-12
ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA p... 67.4 1e-11
cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021... 66.2 2e-11
mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2; ... 60.1 2e-09
hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polyme... 60.1 2e-09
dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase (R... 59.7 2e-09
bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, bet... 59.3 3e-09
tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2, ... 53.5 2e-07
cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA poly... 53.1 2e-07
tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7... 49.3 4e-06
cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-direc... 48.5 6e-06
tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021 ... 48.1 7e-06
bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta... 45.4 4e-05
xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide B,... 43.1 2e-04
dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298, ... 42.7 3e-04
hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,... 42.4 4e-04
mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,... 41.6 6e-04
sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K0300... 41.2 0.001
ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA pol... 38.1 0.007
pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putati... 37.0 0.017
ath:AT5G60170 RNA binding / nucleic acid binding / nucleotide ... 30.0 2.2
tpv:TP01_1117 hypothetical protein 28.5 6.0
hsa:27034 ACAD8, ACAD-8, ARC42, FLJ22590; acyl-CoA dehydrogena... 28.5 6.2
mmu:66948 Acad8, 2310016C19Rik, AI786953; acyl-Coenzyme A dehy... 28.5 6.5
sce:YHL028W WSC4, YFW1, YHC8; ER membrane protein involved in ... 27.7 8.7
> tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,
putative (EC:2.7.7.6); K03010 DNA-directed RNA polymerase
II subunit RPB2 [EC:2.7.7.6]
Length=1259
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/133 (70%), Positives = 109/133 (81%), Gaps = 0/133 (0%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
NLTYSS L+V +EQTTY +DP T E + ++ +Y RV LGR+P+MLKS YCWT D+
Sbjct 183 NLTYSSPLYVDVEQTTYTVDPETGAERLVDQVTYSRVLLGRIPMMLKSAYCWTKDLPEHD 242
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGNQ 120
L DVGEC+YDQGGYFIING EKVLVAQERMASNFVYVF+K QPSKF WVAEVRSQ +G Q
Sbjct 243 LADVGECAYDQGGYFIINGGEKVLVAQERMASNFVYVFQKKQPSKFGWVAEVRSQKEGMQ 302
Query 121 ATSGFAIKKRTMT 133
ATSGFA+KKR+ T
Sbjct 303 ATSGFAVKKRSRT 315
> pfa:PFB0715w DNA-directed RNA polymerase II second largest subunit,
putative; K03010 DNA-directed RNA polymerase II subunit
RPB2 [EC:2.7.7.6]
Length=1340
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 111/131 (84%), Gaps = 0/131 (0%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
NLTYSS++++ IEQ+TY ID +T + +++E+ YER+ LGR+P+MLKS +CWT + +
Sbjct 128 NLTYSSAIYIDIEQSTYIIDEVTKKPVLKEKFIYERINLGRIPLMLKSMFCWTKGLPENE 187
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGNQ 120
+ D+GECSYDQGGYFI+NG EKVLVAQERMA+NF+YVFKK QPSKF WVAE+RSQM+ +Q
Sbjct 188 IADMGECSYDQGGYFIVNGGEKVLVAQERMANNFIYVFKKKQPSKFGWVAEIRSQMERSQ 247
Query 121 ATSGFAIKKRT 131
ATSGF++K +T
Sbjct 248 ATSGFSVKMKT 258
> bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta
subunit family protein (EC:2.7.7.6); K03010 DNA-directed
RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1207
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 103/133 (77%), Gaps = 0/133 (0%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
NLTYSS ++V IEQ TY D TN E ++E +Y R+ LGR+P+MLKS YCWT DIS +
Sbjct 153 NLTYSSQIYVDIEQKTYLRDENTNTETLQETITYPRIELGRIPMMLKSAYCWTKDISEDD 212
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGNQ 120
L DVGEC +D+GGYFI+NG E+VL+ QERMA+N++Y+FKK QPSK+S VAE+RSQ + +Q
Sbjct 213 LADVGECPFDEGGYFIVNGGERVLIGQERMANNYIYIFKKKQPSKYSLVAEIRSQPEFSQ 272
Query 121 ATSGFAIKKRTMT 133
T+ F+I ++ +
Sbjct 273 GTTPFSIMMKSTS 285
> cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directed
RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1177
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 100/130 (76%), Gaps = 1/130 (0%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
NLTYSS +FV EQ YK++ +E +V E Y R+ L ++PIML+S YCWTH+IS +
Sbjct 113 NLTYSSPVFVDAEQKVYKLEDDGSETLVYET-VYSRLPLAKIPIMLRSEYCWTHNISERE 171
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGNQ 120
L GEC YDQGGYFIING EKVLV QERMA+NFVY+F+K QPSK++W+AE+RS +G Q
Sbjct 172 LQSAGECVYDQGGYFIINGMEKVLVGQERMANNFVYLFQKNQPSKYTWIAEIRSNREGMQ 231
Query 121 ATSGFAIKKR 130
ATSGF++K R
Sbjct 232 ATSGFSVKLR 241
> tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7.6);
K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1190
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHS-YERVCLGRLPIMLKSFYCWTHDISAE 59
NLTY+S +++ IEQ T+ + N ++V+ + Y RV L R+P+M KS YCWT ++
Sbjct 153 NLTYASQVYIDIEQETFVNE---NGKLVQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDR 209
Query 60 QLPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGN 119
L D+GEC +DQGGYF++NG E+VL+AQERMA+NFVYVF K SK+S VA++RSQ
Sbjct 210 DLSDIGECVFDQGGYFVVNGGERVLIAQERMANNFVYVFNKKN-SKYSAVAQLRSQPDFI 268
Query 120 QATSGFAI 127
Q + I
Sbjct 269 QGVTSLTI 276
> ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA polymerase;
K03010 DNA-directed RNA polymerase II subunit RPB2
[EC:2.7.7.6]
Length=1188
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 85/120 (70%), Gaps = 3/120 (2%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
NLTYS+ L+V + T I + E V E + +V +G++PIML+S YC S +
Sbjct 119 NLTYSAPLYVDV--TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKD 176
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGNQ 120
L ++GEC YDQGGYFIINGSEKVL+AQE+M++N VYVFKK QP+K+++V EVRS M NQ
Sbjct 177 LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRS-MAENQ 235
> sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6);
K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1224
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 87/137 (63%), Gaps = 9/137 (6%)
Query 1 NLTYSSSLFVSIEQTTYK-ID----PLTNEEIVEERHSYE---RVCLGRLPIMLKSFYCW 52
NLTYSS LFV +++ TY+ ID L E I EE +V +GRLPIML+S C+
Sbjct 121 NLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCY 180
Query 53 THDISAEQLPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEV 112
+ + L + EC +D GGYFIINGSEKVL+AQER A N V VFKKA PS S VAE+
Sbjct 181 LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI 240
Query 113 RSQMQ-GNQATSGFAIK 128
RS ++ G++ S +K
Sbjct 241 RSALEKGSRFISTLQVK 257
> xla:398890 polr2b, MGC68569; polymerase (RNA) II (DNA directed)
polypeptide B, 140kDa; K03010 DNA-directed RNA polymerase
II subunit RPB2 [EC:2.7.7.6]
Length=949
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 82/119 (68%), Gaps = 7/119 (5%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
NLTYS+ L+V I +T K EE ++ +H ++ +G++PIML+S YC + ++
Sbjct 117 NLTYSAPLYVDITKTVVK----EGEEQIQTQH--QKTFIGKIPIMLRSTYCLLNGLTDRD 170
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGN 119
L ++ EC D GGYFIINGSEKVL+AQE+MA+N VYVF K + SK+++ AE RS ++ +
Sbjct 171 LCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAK-KDSKYAYTAECRSCLENS 228
> mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase
(RNA) II (DNA directed) polypeptide B (EC:2.7.7.6); K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%), Gaps = 7/119 (5%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
NLTYS+ L+V I +T K EE ++ +H ++ +G++PIML+S YC + ++
Sbjct 117 NLTYSAPLYVDITKTVIK----EGEEQLQTQH--QKTFIGKIPIMLRSTYCLLNGLTDRD 170
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGN 119
L ++ EC D GGYFIINGSEKVL+AQE+MA+N VYVF K + SK+++ E RS ++ +
Sbjct 171 LCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAK-KDSKYAYTGECRSCLENS 228
> hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RNA)
II (DNA directed) polypeptide B, 140kDa (EC:2.7.7.6); K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%), Gaps = 7/119 (5%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
NLTYS+ L+V I +T K EE ++ +H ++ +G++PIML+S YC + ++
Sbjct 117 NLTYSAPLYVDITKTVIK----EGEEQLQTQH--QKTFIGKIPIMLRSTYCLLNGLTDRD 170
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGN 119
L ++ EC D GGYFIINGSEKVL+AQE+MA+N VYVF K + SK+++ E RS ++ +
Sbjct 171 LCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAK-KDSKYAYTGECRSCLENS 228
> dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA directed)
polypeptide B (EC:2.7.7.6); K03010 DNA-directed RNA
polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 80/119 (67%), Gaps = 7/119 (5%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
NLTYS+ L+V I +T K EE +++ +++ +G++PIML+S YC ++
Sbjct 117 NLTYSAPLYVDITKTIIK----DGEE--QQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRD 170
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGN 119
L ++ EC D GGYFIINGSEKVL+AQE+MA+N VYVF K + SK+++ E RS ++ +
Sbjct 171 LCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAK-KDSKYAYTGECRSCLENS 228
> cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member
(rpb-2); K03010 DNA-directed RNA polymerase II subunit RPB2
[EC:2.7.7.6]
Length=1193
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 76/117 (64%), Gaps = 8/117 (6%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
NLTY+S L+V I + + D T + Y++V +G++P+ML+S YC +++
Sbjct 124 NLTYASPLYVDITKVVTRDDSATEK-------VYDKVFVGKVPVMLRSSYCMLSNMTDRD 176
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQ 117
L ++ EC D GGYF+INGSEKVL+AQE+MA+N VYVF + K+++ E RS ++
Sbjct 177 LTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVF-SMKDGKYAFKTECRSCLE 232
> ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding; K03021 DNA-directed RNA polymerase
III subunit RPC2 [EC:2.7.7.6]
Length=1161
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
++TY++ +FV+IE + + + + + V +GR+PIML+S C H E+
Sbjct 111 DMTYAAPIFVNIEY-------VHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEE 163
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYV 97
L +GEC D GGYFII G+EKVL+ QE+++ N + +
Sbjct 164 LARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIII 200
> cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA polymerase
III subunit RPC2 [EC:2.7.7.6]
Length=1154
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 11/101 (10%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
++TYS+ + V IE T N+ + ++ + +GR+PIML+S C D++ E+
Sbjct 109 DMTYSAPISVDIEYTR------GNQRVFKKD-----LIIGRMPIMLRSSKCILRDLAEEE 157
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKA 101
L V EC YD GGYF++ GSEKV++ QE+++ N + V + +
Sbjct 158 LARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNS 198
> pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative
(EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit
RPC2 [EC:2.7.7.6]
Length=1450
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 61/97 (62%), Gaps = 11/97 (11%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
+LTYS+ ++V +E K + + + VE +GRLP+ML+S C ++ S E+
Sbjct 323 DLTYSAPIYVDVEYV--KGNSIITKNNVE---------IGRLPVMLRSDICVLNNKSEEE 371
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYV 97
L +GEC YD GGYFI+ G+E+VL+ QE+++ N + V
Sbjct 372 LMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIV 408
> tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, putative
(EC:2.7.7.6); K03021 DNA-directed RNA polymerase III
subunit RPC2 [EC:2.7.7.6]
Length=1332
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 11/96 (11%)
Query 2 LTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQL 61
+TY++ +FV E + +EI+ +H V +G +P+ML+S C H + L
Sbjct 245 ITYAAPVFVDAEYSK-------GDEIIRRKH----VEIGSIPVMLRSRVCVLHGKDPQTL 293
Query 62 PDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYV 97
+GEC +D GGYFI+ G+EKVL+ QE+++ N + V
Sbjct 294 QRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIV 329
> sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1149
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 11/97 (11%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
++TYS+ ++V IE T I+ ++ V +GR+PIML+S C +D +
Sbjct 122 DMTYSAPIYVDIEYTR-------GRNII----MHKDVEIGRMPIMLRSNKCILYDADESK 170
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYV 97
+ + EC D GGYFI+NG+EKV++ QE+++ N + V
Sbjct 171 MAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV 207
> ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA
polymerase
Length=1172
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 71/130 (54%), Gaps = 17/130 (13%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSY----------ERVCLGRLPIMLKSFY 50
N+TYS+ + V+++ +K + +++ + +Y + + +G +P+M+KS
Sbjct 125 NMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNYVEKKILDVKKQDILIGSIPVMVKSIL 184
Query 51 CWTHDISAEQLPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVA 110
C T + E G+C++DQGGYF+I G+EKV +AQE+M + +++ S W
Sbjct 185 CKTSEKGKENCKK-GDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWI------SNSPWTV 237
Query 111 EVRSQMQGNQ 120
RS+ + N+
Sbjct 238 SFRSENKRNR 247
> ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA
polymerase/ ribonucleoside binding
Length=1055
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 21/132 (15%)
Query 1 NLTYSSSLFVSIEQTTYKI------------DPLTNEEIVEERHSYERVCLGRLPIMLKS 48
N+TYS+ + V+ + +K D +EI++ + + + +G +P+M+KS
Sbjct 7 NMTYSARIKVNAQVEVFKKIVIKHDKFKTGQDEYVEKEILDVKK--QDILIGSIPVMVKS 64
Query 49 FYCWTHDISAEQLPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSW 108
C T + E G C++DQGGYF+I G+EKV +AQE+M + +++ S W
Sbjct 65 VLCKTSEKGKENCKK-GNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWI------SNSPW 117
Query 109 VAEVRSQMQGNQ 120
RS+ + N+
Sbjct 118 TVSFRSETKRNR 129
> cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1287
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 59/97 (60%), Gaps = 11/97 (11%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
++TY++ +FV + D + +V +++ V +GR+P+ML+S C H +A +
Sbjct 191 DITYAAPIFVDV-------DYVRGNTVVRKKN----VEIGRIPVMLRSKVCILHGKTAAE 239
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYV 97
+ + EC +D GGYF++ G+EK ++ QE+++ N + V
Sbjct 240 MVKLNECPHDPGGYFVVKGTEKAILMQEQLSKNRIIV 276
> mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2;
polymerase (RNA) III (DNA directed) polypeptide B (EC:2.7.7.6);
K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1133
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
++TYS+ + V IE T +R + +GR+PIML+S C + +
Sbjct 106 DMTYSAPITVDIEYTRG-----------SQRIIRNALPIGRMPIMLRSSNCVLTGKTPAE 154
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGNQ 120
+ EC D GGYFI+ G EKV++ QE+++ N + V K + A V S +
Sbjct 155 FAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIV---EADRKGAVGASVTSSTHEKK 211
Query 121 ATSGFAIKK 129
+ + A+K+
Sbjct 212 SRTNMAVKQ 220
> hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polymerase
(RNA) III (DNA directed) polypeptide B (EC:2.7.7.6);
K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1075
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
++TYS+ + V IE T +R + +GR+PIML+S C + +
Sbjct 48 DMTYSAPITVDIEYTRG-----------SQRIIRNALPIGRMPIMLRSSNCVLTGKTPAE 96
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGNQ 120
+ EC D GGYFI+ G EKV++ QE+++ N + V K + A V S +
Sbjct 97 FAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIV---EADRKGAVGASVTSSTHEKK 153
Query 121 ATSGFAIKK 129
+ + A+K+
Sbjct 154 SRTNMAVKQ 162
> dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase
(RNA) III (DNA directed) polypeptide B; K03021 DNA-directed
RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1140
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
++TYS+ + V IE T +R + +GR+PIML+S C + +
Sbjct 104 DMTYSAPITVDIEYTRG-----------SQRIIRNALPIGRMPIMLRSSNCVLTGKTPME 152
Query 61 LPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQGNQ 120
+ EC D GGYFI+ G EKV++ QE+++ N + V Q K + A V S +
Sbjct 153 FSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIV---DQDRKGTVGASVTSSTHEKK 209
Query 121 ATSGFAIKK 129
+ + +K+
Sbjct 210 SRTNMIVKQ 218
> bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, beta
subunit; K03021 DNA-directed RNA polymerase III subunit
RPC2 [EC:2.7.7.6]
Length=1171
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 20/105 (19%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYC-WTHDISAE 59
++TYS+ ++V +E N E V + RV +GRLP+ML+S C + + A
Sbjct 121 DITYSAPMYVDVE--------YYNGEGVASK----RVEIGRLPVMLRSCVCALSGGMRAN 168
Query 60 QLPD-------VGECSYDQGGYFIINGSEKVLVAQERMASNFVYV 97
D +GEC YD GGYFII G EKV++ QE+++ V V
Sbjct 169 GNVDNFELSSRLGECPYDPGGYFIIKGVEKVILMQEQLSKCRVIV 213
> tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2,
putative (EC:2.7.7.6); K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1388
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 14/102 (13%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
++TY + L VS ++ + +E+V +G P+M++S C T +S +
Sbjct 152 HITYGAPLKVSFVRSDRRDGAALKKEVV----------VGMAPLMVRSKLCSTRGMSPAE 201
Query 61 LPDVGECSYDQGGYFIINGSEKVL--VAQERMASNFVYVFKK 100
L GE D GGYFIING+E+V+ V Q+R +NF K+
Sbjct 202 LQRAGEDVDDGGGYFIINGNERVIRFVVQQR--TNFPIALKR 241
> cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1127
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 14/92 (15%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
LTY+ +L V I+ + +I+E + LG++PIML+S C +S ++
Sbjct 77 GLTYAGNLKVGIDVHVNG----SRLDIIE-------IILGKVPIMLRSEGCHLRGMSRKE 125
Query 61 LPDVGECSYDQGGYFIINGSEKV---LVAQER 89
L GE ++GGYFI+NGSEKV L+A R
Sbjct 126 LVVAGEEPIEKGGYFIVNGSEKVIRLLIANRR 157
> tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1235
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query 3 TYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQLP 62
TY + L V T+ I +E I+ + V +G +PIM++S C +S E++
Sbjct 96 TYEAPLVV-----TFGIKFFESESIITKE-----VPVGHIPIMVRSNRCNLKGLSGEEMI 145
Query 63 DVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSK-------FSWVAEVRSQ 115
GE + + GGYFII G+EK+L SN+ FK S+ +S +S
Sbjct 146 KQGEDADEPGGYFIIKGNEKMLRQLIVPRSNYPIAFKSDSNSQKNVLFTEYSIFMRCQSD 205
Query 116 MQGNQATS--GFAIKKRTM 132
+ G ++ I KR M
Sbjct 206 LDGTCVSNYLHLTINKRCM 224
> cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-directed
RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1281
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 14/108 (12%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQ 60
+++YS+ L++ E +D ++ +HS + G +PIM+KS C + ++
Sbjct 94 HISYSAPLWLEFEGYNSSLDTVS-------KHS---IYAGTIPIMVKSSSCHLFGLGTKE 143
Query 61 LPDVGECSYDQGGYFIINGSEKVL--VAQERMASNFVYVFKKAQPSKF 106
L + GE + GGYFIING+E+V+ V Q+R N+ K+ + + F
Sbjct 144 LVEKGEDPNEVGGYFIINGNERVIRYVIQQR--CNYPIGLKRPRFATF 189
> tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1244
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 49/135 (36%)
Query 1 NLTYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCW-------- 52
+ TYS+ + V+I+ ++ T +E +E +GR+P+ML+S C+
Sbjct 116 DFTYSAPILVTIDY--FRDYTFTRKENLE---------IGRIPVMLRSCICFLSSDSESN 164
Query 53 -THDISAE--------------QLPD---------------VGECSYDQGGYFIINGSEK 82
HD S +PD + EC YD GGYFII G EK
Sbjct 165 SDHDSSGLPEYNSSKKSMKNNFDIPDGLSKEDRESFYKSYMLDECPYDPGGYFIIKGVEK 224
Query 83 VLVAQERMASNFVYV 97
V++ QE+++ + + V
Sbjct 225 VILMQEQLSKSRIIV 239
> bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta
subunit; K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1283
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query 3 TYSSSLFVSIEQTTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQLP 62
TY SSL V KI P T++ + +E + +G +PIM+KS C IS E++
Sbjct 108 TYESSLIVKF---GLKI-PGTSKVLTKE------LTVGYIPIMVKSKRCNLDGISPEEMV 157
Query 63 DVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQ 102
+ GE + GGYF++ G+E+++ + SN+ K
Sbjct 158 EQGEDIDEPGGYFVVRGNERIVRQLIVLRSNYPLAIKSGN 197
> xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide
B, 128kDa; K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1134
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 0/46 (0%)
Query 39 LGRLPIMLKSFYCWTHDISAEQLPDVGECSYDQGGYFIINGSEKVL 84
LG+ PIM+KS +C +D++ +QL + E + GGYFIING EKV+
Sbjct 134 LGQFPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVI 179
> dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298,
wu:fc91a05, zgc:66298; polymerase (RNA) I polypeptide B (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1132
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 0/46 (0%)
Query 39 LGRLPIMLKSFYCWTHDISAEQLPDVGECSYDQGGYFIINGSEKVL 84
LG++PIM+KS C H +S ++L + E + + GGYFI+NG EKV+
Sbjct 133 LGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVI 178
> hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,
Rpo1-2; polymerase (RNA) I polypeptide B, 128kDa (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1079
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 0/46 (0%)
Query 39 LGRLPIMLKSFYCWTHDISAEQLPDVGECSYDQGGYFIINGSEKVL 84
LG +PIM+KS C ++ + L + E + + GGYFIING EKV+
Sbjct 78 LGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVI 123
> mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,
Rpo1-2; polymerase (RNA) I polypeptide B (EC:2.7.7.6); K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1135
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 0/46 (0%)
Query 39 LGRLPIMLKSFYCWTHDISAEQLPDVGECSYDQGGYFIINGSEKVL 84
LG +PIM+KS C +++ L + E + + GGYFIING EKV+
Sbjct 134 LGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVI 179
> sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1203
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query 30 ERHSYERVCLGRLPIMLKSFYCWTHDISAEQLPDVGECSYDQGGYFIINGSEKV---LVA 86
E + +E G LP+ML+S C + +S +L E S + GGYFI+NG EK+ L+
Sbjct 149 EENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIV 208
Query 87 QER 89
Q R
Sbjct 209 QRR 211
> ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding; K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1178
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
Query 39 LGRLPIMLKSFYCWTHDISAEQLPDVGECSYDQGGYFIINGSEKVL 84
G+ PIML S C +L E + + GGYFI+NG E+V
Sbjct 121 FGQFPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVF 166
> pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putative;
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1517
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 0/48 (0%)
Query 37 VCLGRLPIMLKSFYCWTHDISAEQLPDVGECSYDQGGYFIINGSEKVL 84
+C G +PIM+ S C +++ ++L GE GG+F+++G KV+
Sbjct 176 ICAGHIPIMIMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVI 223
> ath:AT5G60170 RNA binding / nucleic acid binding / nucleotide
binding / protein binding / zinc ion binding
Length=985
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 13/59 (22%)
Query 60 QLPDVGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPSKFSWVAEVRSQMQG 118
+LPD+ +C D IN +K + ++R+ + +P + W+++++SQMQG
Sbjct 496 KLPDLEQCRIDSS----INTDKKAISLEDRIP--------RTRPG-WDWISDLQSQMQG 541
> tpv:TP01_1117 hypothetical protein
Length=347
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 22/86 (25%)
Query 43 PIMLKSFYCWTHDISAEQLPDVGECSYDQGGYFIINGSEKV-LVAQERMASNFVYVFKKA 101
P+ +K + W+ D +E V + SEKV LVA+ + N++YV +
Sbjct 280 PVTMKVYTSWSSD--SENTTSVKK-------------SEKVQLVAR---SGNWIYVRVNS 321
Query 102 QPSKFSWVAE---VRSQMQGNQATSG 124
P+++ W+ E V S+M + T+
Sbjct 322 NPNRYGWIPEFTLVESEMLSRKMTTN 347
> hsa:27034 ACAD8, ACAD-8, ARC42, FLJ22590; acyl-CoA dehydrogenase
family, member 8; K11538 isobutyryl-CoA dehydrogenase [EC:1.3.99.-]
Length=415
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query 5 SSSLFVSIEQ-TTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQLPD 63
S++ ++SI + ID NEE +RH + C + + YC T S
Sbjct 118 STTAYISIHNMCAWMIDSFGNEE---QRHKF---CPPLCTMEKFASYCLTEPGSGSDAAS 171
Query 64 VGECSYDQGGYFIINGSEKVLVAQERMASNFVYVFKKAQPS 104
+ + QG ++I+NGS K ++ + +V + + P
Sbjct 172 LLTSAKKQGDHYILNGS-KAFISGAGESDIYVVMCRTGGPG 211
> mmu:66948 Acad8, 2310016C19Rik, AI786953; acyl-Coenzyme A dehydrogenase
family, member 8; K11538 isobutyryl-CoA dehydrogenase
[EC:1.3.99.-]
Length=413
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query 5 SSSLFVSIEQ-TTYKIDPLTNEEIVEERHSYERVCLGRLPIMLKSFYCWTHDISAEQLPD 63
S++ ++SI + ID NEE +RH + C + + YC T S
Sbjct 116 STTAYISIHNMCAWMIDSFGNEE---QRHKF---CPPLCTMEKFASYCLTEPGSGSDAAS 169
Query 64 VGECSYDQGGYFIINGSEKVL 84
+ + QG ++I+NGS+ +
Sbjct 170 LLTSAKQQGDHYILNGSKAFI 190
> sce:YHL028W WSC4, YFW1, YHC8; ER membrane protein involved in
the translocation of soluble secretory proteins and insertion
of membrane proteins into the ER membrane; may also have
a role in the stress response but has only partial functional
overlap with WSC1-3
Length=605
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 0/37 (0%)
Query 38 CLGRLPIMLKSFYCWTHDISAEQLPDVGECSYDQGGY 74
C G +++ F CW D VG+CS GY
Sbjct 56 CAGHQFAIVQGFMCWCSDSEPSTQTSVGDCSGTCPGY 92
Lambda K H
0.318 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2165519004
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
Posted date: Sep 16, 2011 8:45 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40