bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
164,496 sequences; 82,071,388 total letters
Query= Eace_1900_orf1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_030960 splicing factor 3B subunit 3, putative ; K12... 245 6e-65
pfa:PFL1680w splicing factor 3b, subunit 3, 130kD, putative; K... 177 1e-44
cpv:cgd8_4240 possible spliceosome factor ; K12830 splicing fa... 144 2e-34
bbo:BBOV_II004270 18.m06355; splicing factor 3b, subunit 3, 13... 129 6e-30
ath:AT3G55200 splicing factor, putative; K12830 splicing facto... 125 6e-29
ath:AT3G55220 splicing factor, putative 125 6e-29
dre:406824 sf3b3, ik:tdsubc_2b2, wu:fb81f05, xx:tdsubc_2b2, zg... 120 2e-27
tpv:TP04_0182 hypothetical protein; K12830 splicing factor 3B ... 119 4e-27
hsa:23450 SF3B3, KIAA0017, RSE1, SAP130, SF3b130, STAF130; spl... 118 9e-27
mmu:101943 Sf3b3, 1810061H24Rik, 5730409A01Rik, AA409318, D8Er... 117 1e-26
cel:K02F2.3 tag-203; Temporarily Assigned Gene name family mem... 86.3 4e-17
hsa:1642 DDB1, DDBA, UV-DDB1, XAP1, XPCE, XPE, XPE-BF; damage-... 45.8 6e-05
hsa:100290337 DNA damage-binding protein 1-like; K10610 DNA da... 45.8 6e-05
mmu:13194 Ddb1, 127kDa, AA408517, p127-Ddb1; damage specific D... 45.8 6e-05
xla:399026 ddb1, MGC68476, ddba, uv-ddb1, xap1, xpce, xpe, xpe... 43.9 2e-04
sce:YML049C RSE1; Protein involved in pre-mRNA splicing; compo... 43.1 4e-04
ath:AT4G21100 DDB1B; DDB1B (Damaged DNA Binding Protein 1 B); ... 36.2 0.042
ath:AT4G05420 DDB1A; DDB1A (DAMAGED DNA BINDING PROTEIN 1A); D... 35.4 0.078
hsa:54084 TSPEAR, C21orf29, MGC11251; thrombospondin-type lami... 32.3 0.65
sce:YOR143C THI80; Thi80p (EC:2.7.6.2); K00949 thiamine pyroph... 29.6 4.5
> tgo:TGME49_030960 splicing factor 3B subunit 3, putative ; K12830
splicing factor 3B subunit 3
Length=1233
Score = 245 bits (625), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 110/161 (68%), Positives = 136/161 (84%), Gaps = 0/161 (0%)
Query 1 RAGEGKWGSCLRIVNPLLATTIEKLTYETDEAAISCCCCEFEGLPLLIVGTVTAMTLRPK 60
+AG GKWGSC+RIVNPL+A TI+K++ ETDEAA+SCC CE EGLPLL+VGTVTAMTL+PK
Sbjct 877 KAGPGKWGSCIRIVNPLMAMTIDKVSLETDEAALSCCFCEMEGLPLLVVGTVTAMTLKPK 936
Query 61 KMAAASIKVYAYDTNFRLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLYALGKKRLLK 120
K+ ASIKV++YD F L+ +HSTPVED P AFRGMLLA VG++LRLYALG+KRLLK
Sbjct 937 KVPHASIKVFSYDDKFSLSLVHSTPVEDYPMALTAFRGMLLAGVGHKLRLYALGRKRLLK 996
Query 121 KCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKYNAAANL 161
KCEYKNLP + F+RV+GDR+F GD+ ES+HV++Y + NL
Sbjct 997 KCEYKNLPCGVAFIRVAGDRLFVGDVRESVHVMRYRLSENL 1037
> pfa:PFL1680w splicing factor 3b, subunit 3, 130kD, putative;
K12830 splicing factor 3B subunit 3
Length=1329
Score = 177 bits (450), Expect = 1e-44, Method: Composition-based stats.
Identities = 79/160 (49%), Positives = 121/160 (75%), Gaps = 0/160 (0%)
Query 1 RAGEGKWGSCLRIVNPLLATTIEKLTYETDEAAISCCCCEFEGLPLLIVGTVTAMTLRPK 60
+AG+GKWGSC++I+NP+ ++K++ + +EAA+S C CE E L LIVGT T ++L+ K
Sbjct 973 KAGQGKWGSCIKIINPVNLQILDKISLDMEEAALSVCACELEALHCLIVGTTTNLSLKTK 1032
Query 61 KMAAASIKVYAYDTNFRLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLYALGKKRLLK 120
+ +AS++VY YD ++L LH TP+E+ P CF ++ G L+AS+GN+LR+YALGKK+LLK
Sbjct 1033 SLTSASLRVYTYDIQYKLNLLHITPIEEQPYCFCSYNGKLIASIGNKLRIYALGKKKLLK 1092
Query 121 KCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKYNAAAN 160
KCEYK++P +V +++SG+RIFA D+ ES+ + Y+ N
Sbjct 1093 KCEYKDIPEAIVSIKISGNRIFACDIRESVLIFFYDPNQN 1132
> cpv:cgd8_4240 possible spliceosome factor ; K12830 splicing
factor 3B subunit 3
Length=1317
Score = 144 bits (362), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 23/182 (12%)
Query 2 AGEGKWGSCLRIVNPLLATTIEKLTYETDEAAISCCCCEFE--GLPLLIVGTVTAMTLRP 59
AGEGKWG C+RIVN TI+ + +T+E IS C C+F+ LP L++GTV M L
Sbjct 938 AGEGKWGGCVRIVNLKSMETIQLIPLDTNEGCISACVCKFDELDLPCLVLGTVYGMKLNR 997
Query 60 KKMA---------------------AASIKVYAYDTNFRLTFLHSTPVEDVPQCFAAFRG 98
A+IK++ YD+N+ +H TP+E+ +RG
Sbjct 998 GYNNNNSNNSTDSAKNNDKENHDSFGAAIKIFKYDSNYNFELVHITPIENSATALTGWRG 1057
Query 99 MLLASVGNRLRLYALGKKRLLKKCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKYNAA 158
LL + LR+Y+LGKKRLL+K EY+N+P L +++V DRIFAGD+ + V K+N
Sbjct 1058 RLLVGINKTLRVYSLGKKRLLRKSEYRNIPQGLTWIKVVNDRIFAGDISNGVLVFKFNNT 1117
Query 159 AN 160
+N
Sbjct 1118 SN 1119
> bbo:BBOV_II004270 18.m06355; splicing factor 3b, subunit 3,
130kD; K12830 splicing factor 3B subunit 3
Length=1169
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Query 1 RAGEGKWGSCLRIVNPLLATTIEKLTYETDEAAISCCCCEFEGLPLLIVGTVTAMTLRPK 60
+AG G+W SC+RIVNPL TT KL +ET+EAA + +G+ L +GT L+
Sbjct 830 KAGTGRWASCVRIVNPLNLTTAAKLLFETNEAATAAAVVVLDGMQCLCIGTTVGYDLKNT 889
Query 61 KMAAASIKVYAYDTNFRLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLYALGKKRLLK 120
+ I+VY Y NF + LH T V V + F + G LLASVG R+RLYALGKK+LL
Sbjct 890 DDVESYIRVYCYGANFEIRLLHVTRVGGVVRAFTGYEGRLLASVGKRIRLYALGKKQLLL 949
Query 121 KCEYKNLPST-LVFLRVSGDRIFAGDMCESIHVLK 154
K E++ ++L G RIFAGD+ E I +L+
Sbjct 950 KAEHRTCSDHGFIWLNAVGSRIFAGDIREGIQILR 984
> ath:AT3G55200 splicing factor, putative; K12830 splicing factor
3B subunit 3
Length=1214
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 94/165 (56%), Gaps = 5/165 (3%)
Query 1 RAGEGKWGSCLRIVNPLLATTIEKLTYETDEAAISCCCCEF---EGLPLLIVGTVTAMTL 57
+A KW SC+R+++P ATT L + +EAA S C F E LL VGTV M
Sbjct 853 KAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQF 912
Query 58 RPKK-MAAASIKVYAY-DTNFRLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLYALGK 115
PKK + A I +Y + + L LH T VE VP F+G LLA +G LRLY LGK
Sbjct 913 WPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGK 972
Query 116 KRLLKKCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKYNAAAN 160
KRLL+KCE K P+T++ ++ DRI+ GD+ ES H KY N
Sbjct 973 KRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDEN 1017
> ath:AT3G55220 splicing factor, putative
Length=1214
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 94/165 (56%), Gaps = 5/165 (3%)
Query 1 RAGEGKWGSCLRIVNPLLATTIEKLTYETDEAAISCCCCEF---EGLPLLIVGTVTAMTL 57
+A KW SC+R+++P ATT L + +EAA S C F E LL VGTV M
Sbjct 853 KAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQF 912
Query 58 RPKK-MAAASIKVYAY-DTNFRLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLYALGK 115
PKK + A I +Y + + L LH T VE VP F+G LLA +G LRLY LGK
Sbjct 913 WPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGK 972
Query 116 KRLLKKCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKYNAAAN 160
KRLL+KCE K P+T++ ++ DRI+ GD+ ES H KY N
Sbjct 973 KRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDEN 1017
> dre:406824 sf3b3, ik:tdsubc_2b2, wu:fb81f05, xx:tdsubc_2b2,
zgc:55440; splicing factor 3b, subunit 3; K12830 splicing factor
3B subunit 3
Length=1217
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 4/164 (2%)
Query 1 RAGEGKWGSCLRIVNPLLATTIEKLTYETDEAAISCCCCEF-EGLP--LLIVGTVTAMTL 57
+AG G+W S +R++NP+ T++ + E +EAA S C F G ++VG M L
Sbjct 856 KAGSGQWASLVRLINPIQGNTLDLVQLEQNEAAFSVAICRFLNGGDDWYVLVGVARDMIL 915
Query 58 RPKKMAAASIKVY-AYDTNFRLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLYALGKK 116
P+ + I Y +L FLH TPVEDVP A F+G +L VG LR+Y LGKK
Sbjct 916 NPRSVGGGYIYTYRIVGGGDKLEFLHKTPVEDVPLAIAPFQGRVLVGVGKLLRIYDLGKK 975
Query 117 RLLKKCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKYNAAAN 160
+LL+KCE K++P+ + + G R+ D+ ES+ ++Y N
Sbjct 976 KLLRKCENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYRRNEN 1019
> tpv:TP04_0182 hypothetical protein; K12830 splicing factor 3B
subunit 3
Length=1231
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 16/170 (9%)
Query 1 RAGEGKWGSCLRIVNPLLATTIEKLTYETDEAAISCCCCEFEGLPLLIVGTVTAMTLRP- 59
RAG GKW SC+RI+NP+ TI KL + +EAA + C G LL+VGT+ L P
Sbjct 876 RAGPGKWSSCIRIINPVNMETIAKLLFTENEAATAAYSCVLNGQQLLVVGTIKNAHLYPS 935
Query 60 -----KKMAAASIKVYAYDTN--------FRLTFLHSTPVEDVPQCFAAFRG-MLLASVG 105
+SI+VY YD+N F + LH T + +CF + +LL ++G
Sbjct 936 NNDDGNDEVESSIRVYEYDSNYANLGNTGFSIKLLHVTNTKGWIRCFNNYENKLLLCAIG 995
Query 106 NRLRLYALGKKRLLKKCEYKNLPST-LVFLRVSGDRIFAGDMCESIHVLK 154
++LR+YALG+K++L K E+++L S + ++V G RI+ GD+ ES+ +L+
Sbjct 996 SKLRMYALGRKQMLLKGEHRSLTSNGFMDIKVVGSRIYCGDIRESVQLLR 1045
> hsa:23450 SF3B3, KIAA0017, RSE1, SAP130, SF3b130, STAF130; splicing
factor 3b, subunit 3, 130kDa; K12830 splicing factor
3B subunit 3
Length=1217
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 4/164 (2%)
Query 1 RAGEGKWGSCLRIVNPLLATTIEKLTYETDEAAISCCCCEFEGLP---LLIVGTVTAMTL 57
+AG G+W S +R++NP+ T++ + E +EAA S C F ++VG + L
Sbjct 856 KAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLIL 915
Query 58 RPKKMAAASIKVYAYDTNF-RLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLYALGKK 116
P+ +A + Y N +L FLH TPVE+VP A F+G +L VG LR+Y LGKK
Sbjct 916 NPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKK 975
Query 117 RLLKKCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKYNAAAN 160
+LL+KCE K++ + + ++ G R+ D+ ES ++Y N
Sbjct 976 KLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNEN 1019
> mmu:101943 Sf3b3, 1810061H24Rik, 5730409A01Rik, AA409318, D8Ertd633e,
RSE1, SAP130, mKIAA0017; splicing factor 3b, subunit
3; K12830 splicing factor 3B subunit 3
Length=1217
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 4/164 (2%)
Query 1 RAGEGKWGSCLRIVNPLLATTIEKLTYETDEAAISCCCCEFEGLP---LLIVGTVTAMTL 57
+AG G+W S +R++NP+ T++ + E +EAA S C F ++VG + L
Sbjct 856 KAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLIL 915
Query 58 RPKKMAAASIKVYAYDTNF-RLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLYALGKK 116
P+ +A + Y N +L FLH TPVE+VP A F+G +L VG LR+Y LGKK
Sbjct 916 SPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKK 975
Query 117 RLLKKCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKYNAAAN 160
+LL+KCE K++ + + ++ G R+ D+ ES ++Y N
Sbjct 976 KLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNEN 1019
> cel:K02F2.3 tag-203; Temporarily Assigned Gene name family member
(tag-203); K12830 splicing factor 3B subunit 3
Length=1220
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query 1 RAGEGKWGSCLRIVNPLLATTIEKLTY---ETDEAAISCCCCEFEGLP---LLIVG---- 50
RA GKW S + +++ AT+ +KL+Y DE A +F P +++VG
Sbjct 850 RAARGKWASAISLIS---ATSGDKLSYFELPQDENAKCVALVQFSKHPNEAMVLVGCGVN 906
Query 51 -TVTAMTLRPKKMAAASIK--VYAYD---TNFRLTFLHSTPVEDVPQCFAAFRGMLLASV 104
+ + P + + VY + R FLH T FRGM L
Sbjct 907 EVLNVHDIDPNDTSIRPTRGCVYTFHLSANGDRFDFLHRTETPLPVGAIHDFRGMALVGF 966
Query 105 GNRLRLYALGKKRLLKKCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKYNAAAN 160
G LR+Y +G+K+LL KCE KN P ++V ++ +G RI D ES+H L+Y N
Sbjct 967 GRFLRMYDIGQKKLLAKCENKNFPVSIVNIQSTGQRIIVSDSQESVHFLRYRKGDN 1022
> hsa:1642 DDB1, DDBA, UV-DDB1, XAP1, XPCE, XPE, XPE-BF; damage-specific
DNA binding protein 1, 127kDa; K10610 DNA damage-binding
protein 1
Length=1140
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query 4 EGKWGSCLRIVNPLLATTIEKLTYET--------DEAAISCCCCEFEGLP--LLIVGT-- 51
E +G + + N L+ I++ T+E +E A+S C+ P IVGT
Sbjct 779 ETSFGEEVEVHNLLI---IDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAM 835
Query 52 VTAMTLRPKKMAAASIKVYAYDTNFRLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLY 111
V PK+ I V+ Y ++ +L + V+ F G LLAS+ + +RLY
Sbjct 836 VYPEEAEPKQ---GRIVVFQY-SDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLY 891
Query 112 ALG-KKRLLKKCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKY 155
+K L +C + N L +L+ GD I GD+ S+ +L Y
Sbjct 892 EWTTEKELRTECNHYNNIMAL-YLKTKGDFILVGDLMRSVLLLAY 935
> hsa:100290337 DNA damage-binding protein 1-like; K10610 DNA
damage-binding protein 1
Length=1140
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query 4 EGKWGSCLRIVNPLLATTIEKLTYET--------DEAAISCCCCEFEGLP--LLIVGT-- 51
E +G + + N L+ I++ T+E +E A+S C+ P IVGT
Sbjct 779 ETSFGEEVEVHNLLI---IDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAM 835
Query 52 VTAMTLRPKKMAAASIKVYAYDTNFRLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLY 111
V PK+ I V+ Y ++ +L + V+ F G LLAS+ + +RLY
Sbjct 836 VYPEEAEPKQ---GRIVVFQY-SDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLY 891
Query 112 ALG-KKRLLKKCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKY 155
+K L +C + N L +L+ GD I GD+ S+ +L Y
Sbjct 892 EWTTEKELRTECNHYNNIMAL-YLKTKGDFILVGDLMRSVLLLAY 935
> mmu:13194 Ddb1, 127kDa, AA408517, p127-Ddb1; damage specific
DNA binding protein 1; K10610 DNA damage-binding protein 1
Length=1140
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query 4 EGKWGSCLRIVNPLLATTIEKLTYET--------DEAAISCCCCEFEGLP--LLIVGT-- 51
E +G + + N L+ I++ T+E +E A+S C+ P IVGT
Sbjct 779 ETSFGEEVEVHNLLI---IDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAM 835
Query 52 VTAMTLRPKKMAAASIKVYAYDTNFRLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLY 111
V PK+ I V+ Y ++ +L + V+ F G LLAS+ + +RLY
Sbjct 836 VYPEEAEPKQ---GRIVVFQY-SDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLY 891
Query 112 ALG-KKRLLKKCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKY 155
+K L +C + N L +L+ GD I GD+ S+ +L Y
Sbjct 892 EWTTEKELRTECNHYNNIMAL-YLKTKGDFILVGDLMRSVLLLAY 935
> xla:399026 ddb1, MGC68476, ddba, uv-ddb1, xap1, xpce, xpe, xpe-bf;
damage-specific DNA binding protein 1, 127kDa; K10610
DNA damage-binding protein 1
Length=1140
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 21/165 (12%)
Query 4 EGKWGSCLRIVNPLLATTIEKLTYET--------DEAAISCCCCEFEGLP--LLIVGT-- 51
E +G + + N L+ I++ T+E +E +S C+ P +VGT
Sbjct 779 ETSFGEEVEVHNLLI---IDQHTFEVLHTHQFLQNEYTLSLVSCKLGKDPTTYFVVGTAM 835
Query 52 VTAMTLRPKKMAAASIKVYAYDTNFRLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLY 111
V PK+ I V+ Y+ + +L + V+ F G LLAS+ + +RLY
Sbjct 836 VYPDEAEPKQ---GRIVVFQYN-DGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLY 891
Query 112 AL-GKKRLLKKCEYKNLPSTLVFLRVSGDRIFAGDMCESIHVLKY 155
+K L +C + N L +L+ GD I GD+ S+ +L Y
Sbjct 892 EWTAEKELRTECNHYNNIMAL-YLKTKGDFILVGDLMRSVLLLAY 935
> sce:YML049C RSE1; Protein involved in pre-mRNA splicing; component
of the pre-spliceosome; associates with U2 snRNA; involved
in ER to Golgi transport; K12830 splicing factor 3B subunit
3
Length=1361
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query 60 KKMAAASIKVYAYDTNFRLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLYALGKKRLL 119
K++ I V +F + LH T + F+ LL ++G+ + LY LGKK+LL
Sbjct 1001 KRLLTYKILVNKDKLSFDIELLHQTEIISPIHAMLKFKNFLLTAMGSTIVLYGLGKKQLL 1060
Query 120 KKCEYKNLPSTLVFLRV---SGDRIFAGDMCESIHVLKYNAAANL 161
++ + S + + + +R+ GD+ ES+ + ++ A N+
Sbjct 1061 RRSVTQTPVSITKIVSMHQWNYERLAVGDIHESVTLFIWDPAGNV 1105
> ath:AT4G21100 DDB1B; DDB1B (Damaged DNA Binding Protein 1 B);
damaged DNA binding / protein binding; K10610 DNA damage-binding
protein 1
Length=1088
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query 77 RLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLYAL-----GKKRLLKKCEYKNLPSTL 131
RL + + AF G LLAS+ +++LY G + L +C + L
Sbjct 812 RLQLITEKETKGAVYSLNAFNGKLLASINQKIQLYKWMLRDDGTRELQSECGHHGHILAL 871
Query 132 VFLRVSGDRIFAGDMCESIHVLKY 155
+++ GD I GD+ +SI +L Y
Sbjct 872 -YVQTRGDFIAVGDLMKSISLLIY 894
> ath:AT4G05420 DDB1A; DDB1A (DAMAGED DNA BINDING PROTEIN 1A);
DNA binding / protein binding; K10610 DNA damage-binding protein
1
Length=1067
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query 77 RLTFLHSTPVEDVPQCFAAFRGMLLASVGNRLRLYAL-----GKKRLLKKCEYKNLPSTL 131
RL + + AF G LLA++ +++LY G + L +C + L
Sbjct 791 RLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILAL 850
Query 132 VFLRVSGDRIFAGDMCESIHVLKY 155
+++ GD I GD+ +SI +L Y
Sbjct 851 -YVQTRGDFIVVGDLMKSISLLLY 873
> hsa:54084 TSPEAR, C21orf29, MGC11251; thrombospondin-type laminin
G domain and EAR repeats
Length=669
Score = 32.3 bits (72), Expect = 0.65, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query 39 CEFEGLPLLIVG---TVTAMTLRPKKMAAASIKVYAYDTNFRLTFLHSTP---VEDVPQC 92
C PL ++ + A+T +P+ + Y Y+TN R+T P VED
Sbjct 230 CPSRNAPLAVLSIPRVLQALTGKPED---NEVLKYPYETNIRVTLGPQPPCTEVEDAQFW 286
Query 93 FAAFRGMLLASVGNRLRLYALGKKRLLKKCEYKNLPS 129
F A R L VGN K+RL E++NL +
Sbjct 287 FDASRKGLYLCVGNEWVSVLAAKERLDYVEEHQNLST 323
> sce:YOR143C THI80; Thi80p (EC:2.7.6.2); K00949 thiamine pyrophosphokinase
[EC:2.7.6.2]
Length=319
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query 72 YDTNFRLTFL---HSTPVEDVPQCFAAFRGMLLASVGNRLRLYALGKKRLLK-----KCE 123
Y T L FL + T +E PQ FR + + G L +G+ L+K K +
Sbjct 220 YMTPTDLIFLIKKNGTLIEYDPQ----FRNTCIGNCG----LLPIGEATLVKETRGLKWD 271
Query 124 YKNLPSTLVFLRVSGDRIFAGDMC 147
KN P+++V RVS F GD C
Sbjct 272 VKNWPTSVVTGRVSSSNRFVGDNC 295
Lambda K H
0.325 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3702936828
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
Posted date: Sep 16, 2011 8:45 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40