bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
164,496 sequences; 82,071,388 total letters
Query= Eace_2480_orf1
Length=88
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_005180 U1 small nuclear ribonucleoprotein, putative... 71.2 6e-13
ath:AT3G50670 U1-70K; U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTE... 65.1 5e-11
tpv:TP02_0544 U1 small nuclear ribonucleoprotein; K11093 U1 sm... 62.8 3e-10
bbo:BBOV_II005790 18.m06481; u1 snRNP; K11093 U1 small nuclear... 58.5 4e-09
cel:K04G7.10 rnp-7; RNP (RRM RNA binding domain) containing fa... 48.5 5e-06
pfa:MAL13P1.338 U1 small nuclear ribonucleoprotein, putative; ... 48.1 7e-06
cpv:cgd6_990 U1 snrp Snp1p. RRM domain containing protein 47.8 8e-06
xla:397946 snrnp70, MGC130688, snrp70; small nuclear ribonucle... 40.0 0.002
dre:445398 snrnp70, MGC136450, snrp70, wu:fc20b04, zgc:136450;... 40.0 0.002
mmu:20637 Snrnp70, 2700022N21Rik, 3200002N22Rik, 70kDa, AI3250... 39.7 0.002
hsa:6625 SNRNP70, RNPU1Z, RPU1, SNRP70, Snp1, U1-70K, U170K, U... 39.7 0.002
dre:569999 snrnp35, MGC112337, zgc:112337; small nuclear ribon... 36.6 0.021
dre:393572 traf3ip1, Elipsa, MGC63522, zgc:63522; TNF receptor... 33.9 0.13
ath:AT2G43370 U1 small nuclear ribonucleoprotein 70 kDa, putat... 33.5 0.15
hsa:11083 DIDO1, BYE1, C20orf158, DATF1, DIDO2, DIDO3, DIO-1, ... 30.8 1.2
dre:794108 nipblb, nipbl, wu:fi33d08; nipped-b homolog b (Dros... 30.4 1.3
ath:AT4G36690 ATU2AF65A; RNA binding / nucleic acid binding / ... 30.4 1.5
dre:323246 cic, wu:fb93c01; capicua homolog (Drosophila) 29.6 2.2
xla:779322 snrnp35, MGC154877, u1snrnpbp; small nuclear ribonu... 29.3 3.1
hsa:11066 SNRNP35, HM-1, MGC138160, U1SNRNPBP; small nuclear r... 28.1 6.9
dre:553240 rbmx2, im:7141316, zgc:113884; RNA binding motif pr... 28.1 7.4
> tgo:TGME49_005180 U1 small nuclear ribonucleoprotein, putative
; K11093 U1 small nuclear ribonucleoprotein 70kDa
Length=274
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 35/35 (100%), Gaps = 0/35 (0%)
Query 1 KIDGRRVLVDVERARTVPGWLPRRLGGGRGQPRGA 35
KIDGRRVLVDVERARTVPGWLPRRLGGGRG+PRG+
Sbjct 162 KIDGRRVLVDVERARTVPGWLPRRLGGGRGKPRGS 196
> ath:AT3G50670 U1-70K; U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K);
RNA binding / nucleic acid binding / nucleotide binding;
K11093 U1 small nuclear ribonucleoprotein 70kDa
Length=427
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 56/94 (59%), Gaps = 12/94 (12%)
Query 1 KIDGRRVLVDVERARTVPGWLPRRLGGGRGQPRG------AGKNQPDISSLVAQISAPPP 54
KIDGRRVLVDVER RTVP W PRRLGGG G R G+ QP +Q P
Sbjct 203 KIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGEEIVGEQQP--QGRTSQSEEPSR 260
Query 55 SSDSKDKTRDRDRDRERDR----ERDRDRERDTP 84
+ ++K+R++ ++RER R E+ R+R RD P
Sbjct 261 PREEREKSREKGKERERSRELSHEQPRERSRDRP 294
> tpv:TP02_0544 U1 small nuclear ribonucleoprotein; K11093 U1
small nuclear ribonucleoprotein 70kDa
Length=227
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 35/46 (76%), Gaps = 0/46 (0%)
Query 1 KIDGRRVLVDVERARTVPGWLPRRLGGGRGQPRGAGKNQPDISSLV 46
KI GRRV+VDVERARTV GWLPRRLGGG+G+ RGA D LV
Sbjct 171 KISGRRVIVDVERARTVEGWLPRRLGGGKGKSRGAPPKFYDGKPLV 216
> bbo:BBOV_II005790 18.m06481; u1 snRNP; K11093 U1 small nuclear
ribonucleoprotein 70kDa
Length=247
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 35/53 (66%), Gaps = 0/53 (0%)
Query 1 KIDGRRVLVDVERARTVPGWLPRRLGGGRGQPRGAGKNQPDISSLVAQISAPP 53
K+ GRRVLVDVERARTV GW P+RLGGG+G+ R D L+ + PP
Sbjct 171 KVSGRRVLVDVERARTVAGWYPKRLGGGKGRSRTKPPKFYDEKPLILEEHLPP 223
> cel:K04G7.10 rnp-7; RNP (RRM RNA binding domain) containing
family member (rnp-7); K11093 U1 small nuclear ribonucleoprotein
70kDa
Length=332
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query 1 KIDGRRVLVDVERARTVPGWLPRRLGGGRGQPRGAGKNQPDISSLVAQISAPPPSSDSKD 60
K+DG+R++VD ER RT WLPRRLGGG+G R + + + I +S
Sbjct 168 KVDGKRLVVDYERGRTQKTWLPRRLGGGKGDTRKTREAK-------SVIEEREIASGFGG 220
Query 61 KTRDRDRDRERDRERDRDRERD 82
DRDR+R R+R +D R+
Sbjct 221 GYEDRDRERSGSRDRRQDSYRN 242
> pfa:MAL13P1.338 U1 small nuclear ribonucleoprotein, putative;
K11093 U1 small nuclear ribonucleoprotein 70kDa
Length=423
Score = 48.1 bits (113), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 0/45 (0%)
Query 1 KIDGRRVLVDVERARTVPGWLPRRLGGGRGQPRGAGKNQPDISSL 45
KI+ RR+LVD+ER RT+ W+PRRLGGG+G RG+ + + I ++
Sbjct 162 KIENRRILVDIERGRTIKNWIPRRLGGGKGPARGSEEKKKIIHNI 206
> cpv:cgd6_990 U1 snrp Snp1p. RRM domain containing protein
Length=281
Score = 47.8 bits (112), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/36 (69%), Positives = 28/36 (77%), Gaps = 0/36 (0%)
Query 2 IDGRRVLVDVERARTVPGWLPRRLGGGRGQPRGAGK 37
IDG +VLVDVER RTV WLP+RLGGG G+ RG K
Sbjct 168 IDGWKVLVDVERGRTVENWLPKRLGGGLGKVRGQEK 203
> xla:397946 snrnp70, MGC130688, snrp70; small nuclear ribonucleoprotein
70kDa (U1); K11093 U1 small nuclear ribonucleoprotein
70kDa
Length=471
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%), Gaps = 0/20 (0%)
Query 1 KIDGRRVLVDVERARTVPGW 20
KIDGRRVLVDVER RTV GW
Sbjct 171 KIDGRRVLVDVERGRTVKGW 190
> dre:445398 snrnp70, MGC136450, snrp70, wu:fc20b04, zgc:136450;
small nuclear ribonucleoprotein 70 (U1); K11093 U1 small
nuclear ribonucleoprotein 70kDa
Length=495
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%), Gaps = 0/20 (0%)
Query 1 KIDGRRVLVDVERARTVPGW 20
KIDGRRVLVDVER RTV GW
Sbjct 168 KIDGRRVLVDVERGRTVKGW 187
> mmu:20637 Snrnp70, 2700022N21Rik, 3200002N22Rik, 70kDa, AI325098,
R74807, Rnulp70, Snrp70, Srnp70, U1-70, U1-70K; small
nuclear ribonucleoprotein 70 (U1); K11093 U1 small nuclear ribonucleoprotein
70kDa
Length=448
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%), Gaps = 0/20 (0%)
Query 1 KIDGRRVLVDVERARTVPGW 20
KIDGRRVLVDVER RTV GW
Sbjct 168 KIDGRRVLVDVERGRTVKGW 187
> hsa:6625 SNRNP70, RNPU1Z, RPU1, SNRP70, Snp1, U1-70K, U170K,
U1AP, U1RNP; small nuclear ribonucleoprotein 70kDa (U1); K11093
U1 small nuclear ribonucleoprotein 70kDa
Length=437
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%), Gaps = 0/20 (0%)
Query 1 KIDGRRVLVDVERARTVPGW 20
KIDGRRVLVDVER RTV GW
Sbjct 168 KIDGRRVLVDVERGRTVKGW 187
> dre:569999 snrnp35, MGC112337, zgc:112337; small nuclear ribonucleoprotein
35 (U11/U12); K13155 U11/U12 small nuclear ribonucleoprotein
35 kDa protein
Length=208
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 6/45 (13%)
Query 2 IDGRRVLVDVERARTVPGWLPRRLGGGR------GQPRGAGKNQP 40
+D +LVDVE+ RT+PGW PRRLGGG+ GQ R G+++P
Sbjct 116 LDQYELLVDVEQERTLPGWRPRRLGGGQGGQKESGQLRFGGRDRP 160
> dre:393572 traf3ip1, Elipsa, MGC63522, zgc:63522; TNF receptor-associated
factor 3 interacting protein 1
Length=629
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
Query 59 KDKTRDRDRDRERDRERDRDRERD 82
KDKTR+++R+RE+DR R+++RERD
Sbjct 224 KDKTREKEREREKDRNREKERERD 247
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 25/29 (86%), Gaps = 0/29 (0%)
Query 59 KDKTRDRDRDRERDRERDRDRERDTPSQR 87
KDK+RDR++D+ R++ER+R+++R+ +R
Sbjct 216 KDKSRDREKDKTREKEREREKDRNREKER 244
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 19/22 (86%), Gaps = 0/22 (0%)
Query 61 KTRDRDRDRERDRERDRDRERD 82
K RDRD+D+ RDRE+D+ RE++
Sbjct 210 KDRDRDKDKSRDREKDKTREKE 231
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 22/23 (95%), Gaps = 0/23 (0%)
Query 59 KDKTRDRDRDRERDRERDRDRER 81
K++ R++DR+RE++RERD+DR++
Sbjct 230 KEREREKDRNREKERERDKDRDK 252
> ath:AT2G43370 U1 small nuclear ribonucleoprotein 70 kDa, putative;
K13155 U11/U12 small nuclear ribonucleoprotein 35 kDa
protein
Length=333
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 0/22 (0%)
Query 2 IDGRRVLVDVERARTVPGWLPR 23
IDGR ++VD R + +PGW+PR
Sbjct 130 IDGREIIVDYNRQQLMPGWIPR 151
> hsa:11083 DIDO1, BYE1, C20orf158, DATF1, DIDO2, DIDO3, DIO-1,
DIO1, DKFZp434P1115, FLJ11265, KIAA0333, MGC16140, dJ885L7.8;
death inducer-obliterator 1
Length=2240
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 0/24 (0%)
Query 59 KDKTRDRDRDRERDRERDRDRERD 82
KD +RD DR+RER RDR+RE D
Sbjct 2141 KDSSRDWDRNRERSANRDREREAD 2164
> dre:794108 nipblb, nipbl, wu:fi33d08; nipped-b homolog b (Drosophila);
K06672 cohesin loading factor subunit SCC2
Length=2856
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 21/24 (87%), Gaps = 0/24 (0%)
Query 59 KDKTRDRDRDRERDRERDRDRERD 82
+DK RD+DRD+ R+++RD+ RE+D
Sbjct 800 RDKVRDKDRDKVREKDRDKVREKD 823
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 21/24 (87%), Gaps = 0/24 (0%)
Query 59 KDKTRDRDRDRERDRERDRDRERD 82
+DK R++DRD+ R+++RD+ RE+D
Sbjct 808 RDKVREKDRDKVREKDRDKLREKD 831
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%), Gaps = 2/26 (7%)
Query 59 KDKTRDRDRD--RERDRERDRDRERD 82
+DK R++DRD RE+DRE+ R+R+RD
Sbjct 816 RDKVREKDRDKLREKDREKIRERDRD 841
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 21/25 (84%), Gaps = 0/25 (0%)
Query 58 SKDKTRDRDRDRERDRERDRDRERD 82
++DK ++DRD+ RD++RD+ RE+D
Sbjct 791 NQDKELEKDRDKVRDKDRDKVREKD 815
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 21/24 (87%), Gaps = 0/24 (0%)
Query 59 KDKTRDRDRDRERDRERDRDRERD 82
+DK R++DR++ R+R+RD+ RE+D
Sbjct 824 RDKLREKDREKIRERDRDKGREKD 847
> ath:AT4G36690 ATU2AF65A; RNA binding / nucleic acid binding
/ nucleotide binding
Length=573
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query 54 PSSDSKDKTRD--RDRDRERDRERDRDRERDTPSQR 87
P +S+D R+ R +DRER++ RD+DRERD+ R
Sbjct 37 PKRESRDHERETSRSKDREREKGRDKDRERDSEVSR 72
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 0/26 (0%)
Query 57 DSKDKTRDRDRDRERDRERDRDRERD 82
DS+ R RDRD E+ +ER RD++RD
Sbjct 67 DSEVSRRSRDRDGEKSKERSRDKDRD 92
> dre:323246 cic, wu:fb93c01; capicua homolog (Drosophila)
Length=2350
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query 22 PRRLGGGRGQPRGAGKNQPD-ISSLVAQISAPPPSSDSKDKTRDRDRDRERDRERDRDRE 80
P G G P+ P + + +A I P S D + ++R+++R+RD+ER+R+++
Sbjct 1957 PSHSGSAPGTPKLITARPPQKVKATLANI--PVGSYDGGGRGKEREKERDRDKEREREKD 2014
Query 81 RDTPS 85
+DT S
Sbjct 2015 KDTSS 2019
> xla:779322 snrnp35, MGC154877, u1snrnpbp; small nuclear ribonucleoprotein
35kDa (U11/U12); K13155 U11/U12 small nuclear
ribonucleoprotein 35 kDa protein
Length=272
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query 2 IDGRRVLVDVERARTVPGWLPRRLGGGR------GQPRGAGKNQP 40
ID R V VD E R + GW+PRR GGG GQ R G+++P
Sbjct 117 IDQREVFVDFELERNLKGWIPRRFGGGFGGKKESGQLRFGGRDRP 161
> hsa:11066 SNRNP35, HM-1, MGC138160, U1SNRNPBP; small nuclear
ribonucleoprotein 35kDa (U11/U12); K13155 U11/U12 small nuclear
ribonucleoprotein 35 kDa protein
Length=246
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query 2 IDGRRVLVDVERARTVPGWLPRRLGGGR------GQPRGAGKNQP 40
ID + VD E RT+ GW+PRRLGGG GQ R G+++P
Sbjct 117 IDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRP 161
> dre:553240 rbmx2, im:7141316, zgc:113884; RNA binding motif
protein, X-linked 2; K13107 RNA-binding motif protein, X-linked
2
Length=434
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 0/30 (0%)
Query 58 SKDKTRDRDRDRERDRERDRDRERDTPSQR 87
+D+ R+RD R+RD ERDR+RERD QR
Sbjct 354 ERDQERERDGGRQRDGERDRERERDGGRQR 383
Lambda K H
0.313 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2021645584
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
Posted date: Sep 16, 2011 8:45 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40